Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06263

Experiment: Hydroxy-L-Proline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06261 and H281DRAFT_06262 are separated by 25 nucleotidesH281DRAFT_06262 and H281DRAFT_06263 are separated by 213 nucleotidesH281DRAFT_06263 and H281DRAFT_06264 are separated by 68 nucleotides H281DRAFT_06261: H281DRAFT_06261 - LSU ribosomal protein L21P, at 42,834 to 43,145 _06261 H281DRAFT_06262: H281DRAFT_06262 - LSU ribosomal protein L27P, at 43,171 to 43,434 _06262 H281DRAFT_06263: H281DRAFT_06263 - GTP-binding protein, at 43,648 to 44,769 _06263 H281DRAFT_06264: H281DRAFT_06264 - glutamate 5-kinase, at 44,838 to 45,956 _06264 Position (kb) 43 44 45Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 42.764 kb on + strandat 42.774 kb on + strandat 43.482 kb on + strandat 43.541 kb on + strandat 43.602 kb on + strandat 43.602 kb on + strandat 43.625 kb on + strandat 44.702 kb on + strandat 44.703 kb on - strandat 44.990 kb on - strand, within H281DRAFT_06264at 44.990 kb on - strand, within H281DRAFT_06264at 45.109 kb on - strand, within H281DRAFT_06264at 45.109 kb on - strand, within H281DRAFT_06264at 45.189 kb on + strand, within H281DRAFT_06264at 45.374 kb on + strand, within H281DRAFT_06264

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
remove
42,764 + +0.4
42,774 + -0.3
43,482 + -0.9
43,541 + +0.7
43,602 + +0.3
43,602 + +0.8
43,625 + +0.4
44,702 + +0.9
44,703 - -3.0
44,990 - H281DRAFT_06264 0.14 -3.6
44,990 - H281DRAFT_06264 0.14 -4.5
45,109 - H281DRAFT_06264 0.24 -2.1
45,109 - H281DRAFT_06264 0.24 -3.6
45,189 + H281DRAFT_06264 0.31 -3.5
45,374 + H281DRAFT_06264 0.48 -3.9

Or see this region's nucleotide sequence