Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06261

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06260 and H281DRAFT_06261 are separated by 229 nucleotidesH281DRAFT_06261 and H281DRAFT_06262 are separated by 25 nucleotidesH281DRAFT_06262 and H281DRAFT_06263 are separated by 213 nucleotides H281DRAFT_06260: H281DRAFT_06260 - octaprenyl-diphosphate synthase, at 41,612 to 42,604 _06260 H281DRAFT_06261: H281DRAFT_06261 - LSU ribosomal protein L21P, at 42,834 to 43,145 _06261 H281DRAFT_06262: H281DRAFT_06262 - LSU ribosomal protein L27P, at 43,171 to 43,434 _06262 H281DRAFT_06263: H281DRAFT_06263 - GTP-binding protein, at 43,648 to 44,769 _06263 Position (kb) 42 43 44Strain fitness (log2 ratio) -1 0 1at 42.634 kb on - strandat 42.636 kb on - strandat 42.764 kb on + strandat 42.774 kb on + strandat 43.482 kb on + strandat 43.541 kb on + strandat 43.602 kb on + strandat 43.602 kb on + strandat 43.625 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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42,634 - +0.9
42,636 - +0.0
42,764 + +0.4
42,774 + -0.3
43,482 + -0.9
43,541 + +0.7
43,602 + +0.3
43,602 + +0.8
43,625 + +0.4

Or see this region's nucleotide sequence