Experiment: Hydroxy-L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05997 and H281DRAFT_05998 are separated by 86 nucleotides H281DRAFT_05998 and H281DRAFT_05999 are separated by 158 nucleotides H281DRAFT_05999 and H281DRAFT_06000 are separated by 87 nucleotides
H281DRAFT_05997: H281DRAFT_05997 - succinate dehydrogenase subunit B, at 1 to 657
_05997
H281DRAFT_05998: H281DRAFT_05998 - hypothetical protein, at 744 to 1,064
_05998
H281DRAFT_05999: H281DRAFT_05999 - hypothetical protein, at 1,223 to 1,927
_05999
H281DRAFT_06000: H281DRAFT_06000 - transcriptional regulator, AraC family, at 2,015 to 2,806
_06000
Position (kb) 0
1
2 Strain fitness (log2 ratio) -1
0
1 at 0.283 kb on + strand, within H281DRAFT_05997 at 0.685 kb on - strand at 0.685 kb on - strand at 0.745 kb on + strand at 0.751 kb on + strand at 0.835 kb on + strand, within H281DRAFT_05998 at 0.836 kb on - strand, within H281DRAFT_05998 at 1.010 kb on - strand, within H281DRAFT_05998 at 1.010 kb on - strand, within H281DRAFT_05998 at 1.184 kb on + strand at 1.185 kb on - strand at 1.287 kb on - strand at 1.361 kb on + strand, within H281DRAFT_05999 at 1.361 kb on + strand, within H281DRAFT_05999 at 1.617 kb on + strand, within H281DRAFT_05999 at 1.617 kb on + strand, within H281DRAFT_05999 at 1.618 kb on - strand, within H281DRAFT_05999 at 1.618 kb on - strand at 1.739 kb on - strand, within H281DRAFT_05999 at 1.974 kb on - strand at 2.047 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C) remove 283 + H281DRAFT_05997 0.43 -0.7 685 - -0.7 685 - +0.1 745 + +0.3 751 + +0.9 835 + H281DRAFT_05998 0.28 -0.8 836 - H281DRAFT_05998 0.29 +1.2 1,010 - H281DRAFT_05998 0.83 -0.1 1,010 - H281DRAFT_05998 0.83 -0.1 1,184 + -0.2 1,185 - +0.4 1,287 - +0.7 1,361 + H281DRAFT_05999 0.20 -0.0 1,361 + H281DRAFT_05999 0.20 -0.7 1,617 + H281DRAFT_05999 0.56 -0.3 1,617 + H281DRAFT_05999 0.56 +0.1 1,618 - H281DRAFT_05999 0.56 +0.4 1,618 - -0.1 1,739 - H281DRAFT_05999 0.73 +0.2 1,974 - +0.6 2,047 - +0.6
Or see this region's nucleotide sequence