Experiment: Hydroxy-L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04494 and H281DRAFT_04495 are separated by 240 nucleotides H281DRAFT_04495 and H281DRAFT_04496 are separated by 2 nucleotides H281DRAFT_04496 and H281DRAFT_04497 are separated by 277 nucleotides
H281DRAFT_04494: H281DRAFT_04494 - transcriptional regulator, LuxR family, at 227,133 to 227,678
_04494
H281DRAFT_04495: H281DRAFT_04495 - 3-oxoacid CoA-transferase subunit A, at 227,919 to 228,623
_04495
H281DRAFT_04496: H281DRAFT_04496 - 3-oxoacid CoA-transferase subunit B, at 228,626 to 229,267
_04496
H281DRAFT_04497: H281DRAFT_04497 - Pimeloyl-ACP methyl ester carboxylesterase, at 229,545 to 230,456
_04497
Position (kb) 228
229
230 Strain fitness (log2 ratio) -2
-1
0
1 at 227.663 kb on - strand at 227.693 kb on + strand at 227.693 kb on + strand at 227.694 kb on - strand at 227.697 kb on + strand at 227.697 kb on + strand at 227.697 kb on + strand at 227.697 kb on + strand at 227.697 kb on + strand at 227.698 kb on - strand at 227.698 kb on - strand at 227.698 kb on - strand at 227.702 kb on - strand at 227.711 kb on + strand at 227.712 kb on - strand at 227.738 kb on - strand at 227.832 kb on + strand at 227.914 kb on + strand at 227.914 kb on + strand at 227.914 kb on + strand at 227.914 kb on + strand at 227.914 kb on + strand at 227.915 kb on - strand at 227.915 kb on - strand at 227.915 kb on - strand at 228.063 kb on - strand, within H281DRAFT_04495 at 228.063 kb on - strand, within H281DRAFT_04495 at 228.150 kb on + strand, within H281DRAFT_04495 at 228.150 kb on + strand, within H281DRAFT_04495 at 228.151 kb on - strand, within H281DRAFT_04495 at 228.151 kb on - strand, within H281DRAFT_04495 at 228.282 kb on - strand, within H281DRAFT_04495 at 228.342 kb on + strand, within H281DRAFT_04495 at 228.420 kb on + strand, within H281DRAFT_04495 at 228.533 kb on + strand, within H281DRAFT_04495 at 228.533 kb on + strand, within H281DRAFT_04495 at 229.596 kb on + strand at 229.596 kb on + strand at 229.596 kb on + strand at 229.597 kb on - strand at 229.597 kb on - strand at 229.638 kb on + strand, within H281DRAFT_04497 at 229.638 kb on + strand, within H281DRAFT_04497 at 229.746 kb on + strand at 229.746 kb on + strand, within H281DRAFT_04497 at 229.746 kb on + strand, within H281DRAFT_04497 at 229.747 kb on - strand at 229.810 kb on + strand, within H281DRAFT_04497 at 229.810 kb on + strand, within H281DRAFT_04497 at 229.810 kb on + strand, within H281DRAFT_04497 at 229.810 kb on + strand, within H281DRAFT_04497 at 229.810 kb on + strand, within H281DRAFT_04497 at 229.810 kb on + strand, within H281DRAFT_04497 at 229.811 kb on - strand, within H281DRAFT_04497 at 229.811 kb on - strand, within H281DRAFT_04497 at 229.811 kb on - strand, within H281DRAFT_04497 at 229.827 kb on + strand, within H281DRAFT_04497 at 229.828 kb on - strand, within H281DRAFT_04497 at 229.828 kb on - strand, within H281DRAFT_04497 at 229.828 kb on - strand, within H281DRAFT_04497 at 229.961 kb on - strand, within H281DRAFT_04497 at 229.961 kb on - strand, within H281DRAFT_04497 at 230.124 kb on - strand, within H281DRAFT_04497 at 230.201 kb on + strand, within H281DRAFT_04497 at 230.236 kb on + strand, within H281DRAFT_04497
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C) remove 227,663 - +0.3 227,693 + +0.4 227,693 + +0.3 227,694 - +1.0 227,697 + +0.0 227,697 + +0.3 227,697 + +0.0 227,697 + +0.0 227,697 + -0.0 227,698 - -0.4 227,698 - +0.2 227,698 - +0.1 227,702 - +0.4 227,711 + +0.4 227,712 - -0.8 227,738 - +1.0 227,832 + +0.4 227,914 + -0.2 227,914 + -0.4 227,914 + +0.2 227,914 + +0.9 227,914 + -0.2 227,915 - -0.3 227,915 - -0.4 227,915 - +0.3 228,063 - H281DRAFT_04495 0.20 -0.5 228,063 - H281DRAFT_04495 0.20 -0.2 228,150 + H281DRAFT_04495 0.33 +0.1 228,150 + H281DRAFT_04495 0.33 -0.5 228,151 - H281DRAFT_04495 0.33 +0.5 228,151 - H281DRAFT_04495 0.33 -0.4 228,282 - H281DRAFT_04495 0.51 -0.3 228,342 + H281DRAFT_04495 0.60 +0.0 228,420 + H281DRAFT_04495 0.71 -0.1 228,533 + H281DRAFT_04495 0.87 +0.4 228,533 + H281DRAFT_04495 0.87 -0.3 229,596 + +0.4 229,596 + +1.1 229,596 + +0.3 229,597 - -0.1 229,597 - +0.3 229,638 + H281DRAFT_04497 0.10 +0.1 229,638 + H281DRAFT_04497 0.10 -0.5 229,746 + -0.3 229,746 + H281DRAFT_04497 0.22 +1.1 229,746 + H281DRAFT_04497 0.22 -2.3 229,747 - +0.3 229,810 + H281DRAFT_04497 0.29 -0.2 229,810 + H281DRAFT_04497 0.29 -0.2 229,810 + H281DRAFT_04497 0.29 +0.5 229,810 + H281DRAFT_04497 0.29 -0.1 229,810 + H281DRAFT_04497 0.29 +0.4 229,810 + H281DRAFT_04497 0.29 -0.1 229,811 - H281DRAFT_04497 0.29 -0.1 229,811 - H281DRAFT_04497 0.29 +0.3 229,811 - H281DRAFT_04497 0.29 +0.8 229,827 + H281DRAFT_04497 0.31 -0.5 229,828 - H281DRAFT_04497 0.31 +0.2 229,828 - H281DRAFT_04497 0.31 +0.3 229,828 - H281DRAFT_04497 0.31 +0.5 229,961 - H281DRAFT_04497 0.46 +0.2 229,961 - H281DRAFT_04497 0.46 -0.8 230,124 - H281DRAFT_04497 0.63 +0.6 230,201 + H281DRAFT_04497 0.72 -0.0 230,236 + H281DRAFT_04497 0.76 -0.0
Or see this region's nucleotide sequence