Experiment: Hydroxy-L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03999 and H281DRAFT_04000 are separated by 99 nucleotides H281DRAFT_04000 and H281DRAFT_04001 are separated by 69 nucleotides H281DRAFT_04001 and H281DRAFT_04002 are separated by 79 nucleotides H281DRAFT_04002 and H281DRAFT_04003 are separated by 96 nucleotides H281DRAFT_04003 and H281DRAFT_04004 are separated by 95 nucleotides
H281DRAFT_03999: H281DRAFT_03999 - porin, GBP family, at 103,852 to 104,997
_03999
H281DRAFT_04000: H281DRAFT_04000 - transcription elongation factor GreB, at 105,097 to 105,717
_04000
H281DRAFT_04001: H281DRAFT_04001 - tRNA_Arg_ACG, at 105,787 to 105,863
_04001
H281DRAFT_04002: H281DRAFT_04002 - tRNA_Arg_ACG, at 105,943 to 106,019
_04002
H281DRAFT_04003: H281DRAFT_04003 - Protein of unknown function (DUF2591), at 106,116 to 106,607
_04003
H281DRAFT_04004: H281DRAFT_04004 - (p)ppGpp synthetase I, SpoT/RelA, at 106,703 to 109,063
_04004
Position (kb) 105
106 Strain fitness (log2 ratio) -2
-1
0
1 at 104.872 kb on + strand, within H281DRAFT_03999 at 104.887 kb on + strand at 104.995 kb on + strand at 104.996 kb on - strand at 105.098 kb on + strand at 105.098 kb on + strand at 105.098 kb on + strand at 105.098 kb on + strand at 105.098 kb on + strand at 105.099 kb on - strand at 105.099 kb on - strand at 105.099 kb on - strand at 105.099 kb on - strand at 105.122 kb on + strand at 105.123 kb on - strand at 105.167 kb on + strand, within H281DRAFT_04000 at 105.167 kb on + strand, within H281DRAFT_04000 at 105.168 kb on - strand, within H281DRAFT_04000 at 105.168 kb on - strand, within H281DRAFT_04000 at 105.168 kb on - strand, within H281DRAFT_04000 at 105.415 kb on + strand, within H281DRAFT_04000 at 105.415 kb on + strand, within H281DRAFT_04000 at 105.415 kb on + strand, within H281DRAFT_04000 at 105.415 kb on + strand, within H281DRAFT_04000 at 105.416 kb on - strand, within H281DRAFT_04000 at 105.416 kb on - strand, within H281DRAFT_04000 at 105.440 kb on + strand, within H281DRAFT_04000 at 105.446 kb on + strand, within H281DRAFT_04000 at 105.446 kb on + strand, within H281DRAFT_04000 at 105.446 kb on + strand, within H281DRAFT_04000 at 105.447 kb on - strand, within H281DRAFT_04000 at 105.575 kb on + strand, within H281DRAFT_04000 at 105.575 kb on + strand, within H281DRAFT_04000 at 105.575 kb on + strand, within H281DRAFT_04000 at 105.575 kb on + strand, within H281DRAFT_04000 at 105.576 kb on - strand, within H281DRAFT_04000 at 105.576 kb on - strand, within H281DRAFT_04000 at 105.676 kb on + strand at 105.676 kb on + strand at 105.677 kb on - strand at 105.677 kb on - strand at 105.707 kb on + strand at 105.740 kb on - strand at 105.812 kb on + strand, within H281DRAFT_04001 at 105.896 kb on + strand at 105.921 kb on + strand at 105.964 kb on - strand, within H281DRAFT_04002 at 105.969 kb on - strand, within H281DRAFT_04002 at 106.024 kb on + strand at 106.204 kb on - strand, within H281DRAFT_04003 at 106.570 kb on + strand at 106.599 kb on + strand at 106.600 kb on - strand at 106.794 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C) remove 104,872 + H281DRAFT_03999 0.89 -0.0 104,887 + -2.6 104,995 + -0.3 104,996 - +0.2 105,098 + +1.7 105,098 + -0.2 105,098 + -0.1 105,098 + +0.4 105,098 + +0.3 105,099 - +0.2 105,099 - +0.0 105,099 - -0.1 105,099 - -0.1 105,122 + +0.1 105,123 - +0.3 105,167 + H281DRAFT_04000 0.11 -0.1 105,167 + H281DRAFT_04000 0.11 +0.6 105,168 - H281DRAFT_04000 0.11 -0.1 105,168 - H281DRAFT_04000 0.11 +0.5 105,168 - H281DRAFT_04000 0.11 +0.6 105,415 + H281DRAFT_04000 0.51 +1.1 105,415 + H281DRAFT_04000 0.51 +0.5 105,415 + H281DRAFT_04000 0.51 -0.2 105,415 + H281DRAFT_04000 0.51 -1.4 105,416 - H281DRAFT_04000 0.51 +0.7 105,416 - H281DRAFT_04000 0.51 -0.1 105,440 + H281DRAFT_04000 0.55 +0.2 105,446 + H281DRAFT_04000 0.56 +1.1 105,446 + H281DRAFT_04000 0.56 -0.2 105,446 + H281DRAFT_04000 0.56 +0.5 105,447 - H281DRAFT_04000 0.56 -0.1 105,575 + H281DRAFT_04000 0.77 -0.2 105,575 + H281DRAFT_04000 0.77 -0.3 105,575 + H281DRAFT_04000 0.77 +1.0 105,575 + H281DRAFT_04000 0.77 -0.2 105,576 - H281DRAFT_04000 0.77 +0.2 105,576 - H281DRAFT_04000 0.77 -0.1 105,676 + -0.4 105,676 + -0.3 105,677 - -0.2 105,677 - -0.4 105,707 + +0.2 105,740 - -0.7 105,812 + H281DRAFT_04001 0.32 +0.3 105,896 + +0.1 105,921 + -0.3 105,964 - H281DRAFT_04002 0.27 -0.5 105,969 - H281DRAFT_04002 0.34 +0.2 106,024 + +0.0 106,204 - H281DRAFT_04003 0.18 +0.4 106,570 + +0.7 106,599 + +0.6 106,600 - +1.4 106,794 - +0.2
Or see this region's nucleotide sequence