Experiment: Hydroxy-L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03784 and H281DRAFT_03785 are separated by 5 nucleotides H281DRAFT_03785 and H281DRAFT_03786 are separated by 461 nucleotides H281DRAFT_03786 and H281DRAFT_03787 are separated by 59 nucleotides H281DRAFT_03787 and H281DRAFT_03788 overlap by 4 nucleotides
H281DRAFT_03784: H281DRAFT_03784 - protein phosphatase, at 306,706 to 307,476
_03784
H281DRAFT_03785: H281DRAFT_03785 - hypothetical protein, at 307,482 to 307,769
_03785
H281DRAFT_03786: H281DRAFT_03786 - Lecithin retinol acyltransferase, at 308,231 to 308,722
_03786
H281DRAFT_03787: H281DRAFT_03787 - hypothetical protein, at 308,782 to 309,033
_03787
H281DRAFT_03788: H281DRAFT_03788 - transcriptional regulator, LysR family, at 309,030 to 309,908
_03788
Position (kb) 308
309 Strain fitness (log2 ratio) -1
0
1 at 307.483 kb on + strand at 307.544 kb on + strand, within H281DRAFT_03785 at 307.545 kb on - strand, within H281DRAFT_03785 at 307.654 kb on + strand, within H281DRAFT_03785 at 307.655 kb on - strand, within H281DRAFT_03785 at 307.655 kb on - strand, within H281DRAFT_03785 at 307.672 kb on + strand, within H281DRAFT_03785 at 307.673 kb on - strand, within H281DRAFT_03785 at 307.841 kb on + strand at 308.088 kb on + strand at 308.089 kb on - strand at 308.154 kb on - strand at 308.248 kb on + strand at 308.348 kb on + strand, within H281DRAFT_03786 at 308.349 kb on - strand, within H281DRAFT_03786 at 308.483 kb on + strand, within H281DRAFT_03786 at 308.735 kb on - strand at 309.031 kb on + strand at 309.297 kb on - strand, within H281DRAFT_03788 at 309.408 kb on + strand, within H281DRAFT_03788 at 309.409 kb on - strand, within H281DRAFT_03788 at 309.409 kb on - strand, within H281DRAFT_03788 at 309.522 kb on - strand, within H281DRAFT_03788
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C) remove 307,483 + -0.3 307,544 + H281DRAFT_03785 0.22 +0.1 307,545 - H281DRAFT_03785 0.22 +0.2 307,654 + H281DRAFT_03785 0.60 -0.6 307,655 - H281DRAFT_03785 0.60 -0.3 307,655 - H281DRAFT_03785 0.60 -1.5 307,672 + H281DRAFT_03785 0.66 -0.1 307,673 - H281DRAFT_03785 0.66 -0.3 307,841 + -0.0 308,088 + -1.2 308,089 - +1.0 308,154 - +0.2 308,248 + -0.4 308,348 + H281DRAFT_03786 0.24 -0.4 308,349 - H281DRAFT_03786 0.24 -0.2 308,483 + H281DRAFT_03786 0.51 -1.5 308,735 - -0.6 309,031 + +0.2 309,297 - H281DRAFT_03788 0.30 +0.6 309,408 + H281DRAFT_03788 0.43 +0.2 309,409 - H281DRAFT_03788 0.43 -0.2 309,409 - H281DRAFT_03788 0.43 +0.3 309,522 - H281DRAFT_03788 0.56 -0.2
Or see this region's nucleotide sequence