Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02688

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02686 and H281DRAFT_02687 are separated by 108 nucleotidesH281DRAFT_02687 and H281DRAFT_02688 are separated by 103 nucleotidesH281DRAFT_02688 and H281DRAFT_02689 are separated by 93 nucleotidesH281DRAFT_02689 and H281DRAFT_02690 are separated by 1 nucleotidesH281DRAFT_02690 and H281DRAFT_02691 are separated by 15 nucleotides H281DRAFT_02686: H281DRAFT_02686 - transcriptional regulator, LysR family, at 269,532 to 270,434 _02686 H281DRAFT_02687: H281DRAFT_02687 - Cupin domain protein, at 270,543 to 270,941 _02687 H281DRAFT_02688: H281DRAFT_02688 - 4-carboxymuconolactone decarboxylase, at 271,045 to 271,746 _02688 H281DRAFT_02689: H281DRAFT_02689 - hypothetical protein, at 271,840 to 272,277 _02689 H281DRAFT_02690: H281DRAFT_02690 - hypothetical protein, at 272,279 to 272,713 _02690 H281DRAFT_02691: H281DRAFT_02691 - transcriptional regulator, ArsR family, at 272,729 to 273,046 _02691 Position (kb) 271 272Strain fitness (log2 ratio) -1 0 1at 270.497 kb on + strandat 270.990 kb on - strandat 271.675 kb on + strand, within H281DRAFT_02688at 271.849 kb on - strandat 272.690 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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270,497 + +0.7
270,990 - +0.4
271,675 + H281DRAFT_02688 0.90 -0.2
271,849 - +0.3
272,690 - -0.5

Or see this region's nucleotide sequence