Experiment: Hydroxy-L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01371 and H281DRAFT_01372 are separated by 107 nucleotides H281DRAFT_01372 and H281DRAFT_01373 overlap by 4 nucleotides H281DRAFT_01373 and H281DRAFT_01374 are separated by 307 nucleotides
H281DRAFT_01371: H281DRAFT_01371 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 215,951 to 217,294
_01371
H281DRAFT_01372: H281DRAFT_01372 - protocatechuate 4,5-dioxygenase alpha subunit (EC 1.13.11.8), at 217,402 to 217,761
_01372
H281DRAFT_01373: H281DRAFT_01373 - protocatechuate 4,5-dioxygenase beta subunit (EC 1.13.11.8), at 217,758 to 218,603
_01373
H281DRAFT_01374: H281DRAFT_01374 - transcriptional regulator, GntR family, at 218,911 to 219,705
_01374
Position (kb) 217
218
219 Strain fitness (log2 ratio) -2
-1
0
1 at 217.470 kb on - strand, within H281DRAFT_01372 at 217.514 kb on - strand, within H281DRAFT_01372 at 217.718 kb on + strand, within H281DRAFT_01372 at 217.915 kb on + strand, within H281DRAFT_01373 at 218.463 kb on - strand, within H281DRAFT_01373 at 218.494 kb on + strand, within H281DRAFT_01373 at 218.534 kb on + strand at 218.546 kb on - strand at 218.559 kb on - strand at 218.773 kb on - strand at 218.909 kb on - strand at 219.199 kb on - strand at 219.201 kb on - strand, within H281DRAFT_01374 at 219.227 kb on + strand, within H281DRAFT_01374 at 219.554 kb on - strand, within H281DRAFT_01374
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C) remove 217,470 - H281DRAFT_01372 0.19 -1.7 217,514 - H281DRAFT_01372 0.31 +0.2 217,718 + H281DRAFT_01372 0.88 -2.6 217,915 + H281DRAFT_01373 0.19 -2.4 218,463 - H281DRAFT_01373 0.83 -1.4 218,494 + H281DRAFT_01373 0.87 -2.6 218,534 + -0.5 218,546 - -1.6 218,559 - -1.9 218,773 - +0.7 218,909 - -1.4 219,199 - -0.7 219,201 - H281DRAFT_01374 0.36 -0.3 219,227 + H281DRAFT_01374 0.40 -1.1 219,554 - H281DRAFT_01374 0.81 -1.5
Or see this region's nucleotide sequence