Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01370

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01369 and H281DRAFT_01370 are separated by 45 nucleotidesH281DRAFT_01370 and H281DRAFT_01371 are separated by 278 nucleotides H281DRAFT_01369: H281DRAFT_01369 - DNA damage-inducible DNA polymerase II, at 211,791 to 214,157 _01369 H281DRAFT_01370: H281DRAFT_01370 - phospholipase C, at 214,203 to 215,672 _01370 H281DRAFT_01371: H281DRAFT_01371 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 215,951 to 217,294 _01371 Position (kb) 214 215 216Strain fitness (log2 ratio) -1 0 1at 213.426 kb on + strand, within H281DRAFT_01369at 213.427 kb on - strand, within H281DRAFT_01369at 213.516 kb on - strand, within H281DRAFT_01369at 213.663 kb on - strand, within H281DRAFT_01369at 213.810 kb on + strand, within H281DRAFT_01369at 213.993 kb on + strandat 213.994 kb on - strandat 214.192 kb on - strandat 214.745 kb on - strand, within H281DRAFT_01370at 215.105 kb on - strand, within H281DRAFT_01370at 215.270 kb on - strand, within H281DRAFT_01370at 215.270 kb on - strand, within H281DRAFT_01370at 215.270 kb on - strand, within H281DRAFT_01370at 215.412 kb on + strand, within H281DRAFT_01370at 215.601 kb on + strandat 215.601 kb on + strandat 215.602 kb on - strandat 216.054 kb on - strandat 216.650 kb on - strand, within H281DRAFT_01371

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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213,426 + H281DRAFT_01369 0.69 -0.3
213,427 - H281DRAFT_01369 0.69 +0.3
213,516 - H281DRAFT_01369 0.73 -0.3
213,663 - H281DRAFT_01369 0.79 +0.1
213,810 + H281DRAFT_01369 0.85 +0.5
213,993 + +1.1
213,994 - +0.0
214,192 - +0.6
214,745 - H281DRAFT_01370 0.37 +0.2
215,105 - H281DRAFT_01370 0.61 +0.1
215,270 - H281DRAFT_01370 0.73 +0.3
215,270 - H281DRAFT_01370 0.73 +0.8
215,270 - H281DRAFT_01370 0.73 +0.1
215,412 + H281DRAFT_01370 0.82 +0.1
215,601 + -1.0
215,601 + -0.8
215,602 - +0.2
216,054 - -0.6
216,650 - H281DRAFT_01371 0.52 -0.4

Or see this region's nucleotide sequence