Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00126

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00124 and H281DRAFT_00125 are separated by 90 nucleotidesH281DRAFT_00125 and H281DRAFT_00126 are separated by 78 nucleotidesH281DRAFT_00126 and H281DRAFT_00127 are separated by 155 nucleotides H281DRAFT_00124: H281DRAFT_00124 - DNA polymerase III, chi subunit, at 132,240 to 132,656 _00124 H281DRAFT_00125: H281DRAFT_00125 - Protein of unknown function (DUF2486), at 132,747 to 133,460 _00125 H281DRAFT_00126: H281DRAFT_00126 - cytochrome c, at 133,539 to 133,880 _00126 H281DRAFT_00127: H281DRAFT_00127 - dihydroxyacid dehydratase, at 134,036 to 135,709 _00127 Position (kb) 133 134Strain fitness (log2 ratio) -1 0 1at 132.609 kb on + strand, within H281DRAFT_00124at 132.639 kb on + strandat 132.639 kb on + strandat 132.639 kb on + strandat 132.639 kb on + strandat 132.639 kb on + strandat 132.639 kb on + strandat 132.640 kb on - strandat 132.704 kb on + strandat 132.705 kb on - strandat 132.734 kb on - strandat 132.765 kb on - strandat 133.100 kb on + strand, within H281DRAFT_00125at 133.100 kb on + strand, within H281DRAFT_00125at 133.101 kb on - strand, within H281DRAFT_00125at 133.101 kb on - strand, within H281DRAFT_00125at 133.101 kb on - strand, within H281DRAFT_00125at 133.101 kb on - strand, within H281DRAFT_00125at 133.212 kb on - strand, within H281DRAFT_00125at 133.544 kb on + strandat 133.545 kb on - strandat 133.545 kb on - strandat 133.599 kb on - strand, within H281DRAFT_00126at 133.663 kb on + strand, within H281DRAFT_00126at 133.664 kb on - strand, within H281DRAFT_00126at 133.664 kb on - strand, within H281DRAFT_00126at 133.667 kb on + strandat 133.667 kb on + strand, within H281DRAFT_00126at 133.668 kb on - strandat 133.691 kb on - strand, within H281DRAFT_00126at 133.862 kb on + strandat 133.863 kb on - strandat 133.863 kb on - strandat 133.925 kb on + strandat 133.926 kb on - strandat 133.926 kb on - strandat 133.926 kb on - strandat 133.927 kb on + strandat 133.928 kb on - strandat 133.928 kb on - strandat 133.928 kb on - strandat 133.928 kb on - strandat 133.972 kb on + strandat 133.972 kb on + strandat 133.973 kb on - strandat 133.977 kb on - strandat 134.083 kb on - strandat 134.105 kb on - strandat 134.105 kb on - strandat 134.106 kb on + strandat 134.107 kb on - strandat 134.404 kb on - strand, within H281DRAFT_00127at 134.498 kb on - strand, within H281DRAFT_00127at 134.586 kb on + strand, within H281DRAFT_00127at 134.587 kb on - strand, within H281DRAFT_00127

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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132,609 + H281DRAFT_00124 0.88 -0.2
132,639 + -0.6
132,639 + +0.5
132,639 + -0.1
132,639 + -0.4
132,639 + -0.6
132,639 + -0.4
132,640 - +0.2
132,704 + +0.3
132,705 - +0.2
132,734 - +0.4
132,765 - -0.1
133,100 + H281DRAFT_00125 0.49 -0.1
133,100 + H281DRAFT_00125 0.49 -0.9
133,101 - H281DRAFT_00125 0.50 -0.0
133,101 - H281DRAFT_00125 0.50 -0.5
133,101 - H281DRAFT_00125 0.50 +0.0
133,101 - H281DRAFT_00125 0.50 +0.6
133,212 - H281DRAFT_00125 0.65 +0.2
133,544 + +1.0
133,545 - +0.2
133,545 - -0.2
133,599 - H281DRAFT_00126 0.18 +0.9
133,663 + H281DRAFT_00126 0.36 -0.2
133,664 - H281DRAFT_00126 0.37 -0.4
133,664 - H281DRAFT_00126 0.37 -0.4
133,667 + +1.1
133,667 + H281DRAFT_00126 0.37 -0.1
133,668 - -1.1
133,691 - H281DRAFT_00126 0.44 -0.9
133,862 + +1.1
133,863 - -0.9
133,863 - +1.0
133,925 + +0.2
133,926 - +1.3
133,926 - +0.2
133,926 - -0.2
133,927 + -0.7
133,928 - -0.3
133,928 - +1.2
133,928 - -0.4
133,928 - +1.6
133,972 + +0.2
133,972 + -0.5
133,973 - +0.3
133,977 - +0.3
134,083 - +0.3
134,105 - -0.3
134,105 - +0.3
134,106 + +0.7
134,107 - +0.9
134,404 - H281DRAFT_00127 0.22 -0.8
134,498 - H281DRAFT_00127 0.28 +0.1
134,586 + H281DRAFT_00127 0.33 -0.3
134,587 - H281DRAFT_00127 0.33 -0.3

Or see this region's nucleotide sequence