Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08420 and PGA1_c08430 overlap by 4 nucleotides PGA1_c08430 and PGA1_c08440 are separated by 32 nucleotides
PGA1_c08420: PGA1_c08420 - putative 3-hydroxyacyl-CoA dehydrogenase, at 871,363 to 872,838
_c08420
PGA1_c08430: PGA1_c08430 - short chain dehydrogenase / reductase, at 872,835 to 873,608
_c08430
PGA1_c08440: PGA1_c08440 - Helix-turn-helix., at 873,641 to 874,501
_c08440
Position (kb)
872
873
874 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 871.886 kb on - strand, within PGA1_c08420 at 871.902 kb on + strand, within PGA1_c08420 at 872.046 kb on + strand, within PGA1_c08420 at 872.046 kb on + strand, within PGA1_c08420 at 872.054 kb on - strand, within PGA1_c08420 at 872.054 kb on - strand, within PGA1_c08420 at 872.054 kb on - strand, within PGA1_c08420 at 872.054 kb on - strand, within PGA1_c08420 at 872.111 kb on - strand, within PGA1_c08420 at 872.121 kb on - strand, within PGA1_c08420 at 872.129 kb on + strand, within PGA1_c08420 at 872.178 kb on + strand, within PGA1_c08420 at 872.249 kb on + strand, within PGA1_c08420 at 872.344 kb on - strand, within PGA1_c08420 at 872.381 kb on + strand, within PGA1_c08420 at 872.465 kb on + strand, within PGA1_c08420 at 872.473 kb on - strand, within PGA1_c08420 at 872.530 kb on + strand, within PGA1_c08420 at 872.636 kb on - strand, within PGA1_c08420 at 872.726 kb on + strand at 872.776 kb on - strand at 872.814 kb on - strand at 872.829 kb on + strand at 872.834 kb on + strand at 872.839 kb on + strand at 872.847 kb on + strand at 872.855 kb on - strand at 872.859 kb on + strand at 872.872 kb on - strand at 872.878 kb on + strand at 872.986 kb on + strand, within PGA1_c08430 at 873.045 kb on + strand, within PGA1_c08430 at 873.046 kb on + strand, within PGA1_c08430 at 873.046 kb on + strand, within PGA1_c08430 at 873.066 kb on + strand, within PGA1_c08430 at 873.076 kb on + strand, within PGA1_c08430 at 873.110 kb on + strand, within PGA1_c08430 at 873.110 kb on + strand, within PGA1_c08430 at 873.127 kb on - strand, within PGA1_c08430 at 873.203 kb on - strand, within PGA1_c08430 at 873.215 kb on + strand, within PGA1_c08430 at 873.284 kb on - strand, within PGA1_c08430 at 873.317 kb on + strand, within PGA1_c08430 at 873.319 kb on - strand, within PGA1_c08430 at 873.319 kb on - strand, within PGA1_c08430 at 873.357 kb on + strand, within PGA1_c08430 at 873.365 kb on - strand, within PGA1_c08430 at 873.370 kb on - strand, within PGA1_c08430 at 873.375 kb on - strand, within PGA1_c08430 at 873.394 kb on + strand, within PGA1_c08430 at 873.400 kb on - strand, within PGA1_c08430 at 873.410 kb on + strand, within PGA1_c08430 at 873.410 kb on + strand, within PGA1_c08430 at 873.415 kb on + strand, within PGA1_c08430 at 873.418 kb on - strand, within PGA1_c08430 at 873.446 kb on + strand, within PGA1_c08430 at 873.455 kb on + strand, within PGA1_c08430 at 873.457 kb on - strand, within PGA1_c08430 at 873.463 kb on - strand, within PGA1_c08430 at 873.463 kb on - strand, within PGA1_c08430 at 873.577 kb on + strand at 873.585 kb on - strand at 873.607 kb on + strand at 873.674 kb on + strand at 873.674 kb on + strand at 873.703 kb on - strand at 873.815 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.831 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.843 kb on + strand, within PGA1_c08440 at 873.882 kb on + strand, within PGA1_c08440 at 873.882 kb on + strand, within PGA1_c08440 at 873.890 kb on - strand, within PGA1_c08440 at 873.890 kb on - strand, within PGA1_c08440 at 873.890 kb on - strand, within PGA1_c08440 at 873.900 kb on - strand, within PGA1_c08440 at 873.958 kb on + strand, within PGA1_c08440 at 873.958 kb on + strand, within PGA1_c08440 at 873.966 kb on - strand, within PGA1_c08440 at 874.057 kb on + strand, within PGA1_c08440 at 874.078 kb on - strand, within PGA1_c08440 at 874.297 kb on + strand, within PGA1_c08440 at 874.398 kb on + strand, within PGA1_c08440 at 874.430 kb on + strand at 874.445 kb on + strand at 874.451 kb on - strand at 874.453 kb on - strand at 874.453 kb on - strand at 874.472 kb on + strand at 874.570 kb on + strand at 874.570 kb on + strand at 874.578 kb on - strand at 874.578 kb on - strand at 874.578 kb on - strand at 874.578 kb on - strand at 874.578 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 871,886 - PGA1_c08420 0.35 -0.6 871,902 + PGA1_c08420 0.37 +1.4 872,046 + PGA1_c08420 0.46 -0.3 872,046 + PGA1_c08420 0.46 +1.4 872,054 - PGA1_c08420 0.47 +0.1 872,054 - PGA1_c08420 0.47 +0.8 872,054 - PGA1_c08420 0.47 -0.2 872,054 - PGA1_c08420 0.47 -0.7 872,111 - PGA1_c08420 0.51 -0.2 872,121 - PGA1_c08420 0.51 +0.6 872,129 + PGA1_c08420 0.52 -0.3 872,178 + PGA1_c08420 0.55 -1.5 872,249 + PGA1_c08420 0.60 -1.2 872,344 - PGA1_c08420 0.66 +0.7 872,381 + PGA1_c08420 0.69 -1.0 872,465 + PGA1_c08420 0.75 -1.3 872,473 - PGA1_c08420 0.75 -1.5 872,530 + PGA1_c08420 0.79 +0.7 872,636 - PGA1_c08420 0.86 -0.4 872,726 + -2.4 872,776 - -1.5 872,814 - -1.6 872,829 + +0.2 872,834 + -1.2 872,839 + -2.2 872,847 + +0.1 872,855 - +0.0 872,859 + +0.3 872,872 - +0.5 872,878 + -0.5 872,986 + PGA1_c08430 0.20 +0.8 873,045 + PGA1_c08430 0.27 +0.8 873,046 + PGA1_c08430 0.27 +0.3 873,046 + PGA1_c08430 0.27 -0.6 873,066 + PGA1_c08430 0.30 -0.2 873,076 + PGA1_c08430 0.31 -1.4 873,110 + PGA1_c08430 0.36 +0.7 873,110 + PGA1_c08430 0.36 +0.5 873,127 - PGA1_c08430 0.38 -0.9 873,203 - PGA1_c08430 0.48 -1.6 873,215 + PGA1_c08430 0.49 -0.3 873,284 - PGA1_c08430 0.58 -1.3 873,317 + PGA1_c08430 0.62 +1.4 873,319 - PGA1_c08430 0.63 -0.6 873,319 - PGA1_c08430 0.63 -1.6 873,357 + PGA1_c08430 0.67 +1.4 873,365 - PGA1_c08430 0.68 +1.7 873,370 - PGA1_c08430 0.69 -0.3 873,375 - PGA1_c08430 0.70 -1.3 873,394 + PGA1_c08430 0.72 -2.6 873,400 - PGA1_c08430 0.73 +0.0 873,410 + PGA1_c08430 0.74 +0.2 873,410 + PGA1_c08430 0.74 +0.7 873,415 + PGA1_c08430 0.75 -0.3 873,418 - PGA1_c08430 0.75 +0.7 873,446 + PGA1_c08430 0.79 +0.1 873,455 + PGA1_c08430 0.80 +1.1 873,457 - PGA1_c08430 0.80 -0.3 873,463 - PGA1_c08430 0.81 -0.7 873,463 - PGA1_c08430 0.81 +0.4 873,577 + -0.4 873,585 - -0.7 873,607 + +0.1 873,674 + -0.6 873,674 + -0.9 873,703 - -2.6 873,815 + PGA1_c08440 0.20 +0.7 873,828 + PGA1_c08440 0.22 +0.4 873,828 + PGA1_c08440 0.22 +2.2 873,828 + PGA1_c08440 0.22 +2.0 873,828 + PGA1_c08440 0.22 -0.8 873,828 + PGA1_c08440 0.22 +0.3 873,828 + PGA1_c08440 0.22 +0.6 873,828 + PGA1_c08440 0.22 -1.2 873,831 - PGA1_c08440 0.22 -1.2 873,836 - PGA1_c08440 0.23 +0.3 873,836 - PGA1_c08440 0.23 -0.3 873,836 - PGA1_c08440 0.23 +0.6 873,836 - PGA1_c08440 0.23 -2.5 873,836 - PGA1_c08440 0.23 -1.2 873,843 + PGA1_c08440 0.23 +1.3 873,882 + PGA1_c08440 0.28 +0.7 873,882 + PGA1_c08440 0.28 -0.2 873,890 - PGA1_c08440 0.29 +0.8 873,890 - PGA1_c08440 0.29 +0.0 873,890 - PGA1_c08440 0.29 -2.3 873,900 - PGA1_c08440 0.30 -0.3 873,958 + PGA1_c08440 0.37 -0.6 873,958 + PGA1_c08440 0.37 -0.2 873,966 - PGA1_c08440 0.38 -0.1 874,057 + PGA1_c08440 0.48 +0.8 874,078 - PGA1_c08440 0.51 +0.8 874,297 + PGA1_c08440 0.76 +0.9 874,398 + PGA1_c08440 0.88 -0.4 874,430 + +1.8 874,445 + +0.8 874,451 - +1.4 874,453 - -0.2 874,453 - -0.4 874,472 + -0.0 874,570 + +0.4 874,570 + -1.3 874,578 - -2.2 874,578 - +0.5 874,578 - +0.0 874,578 - -0.1 874,578 - -1.2
Or see this region's nucleotide sequence