Strain Fitness in Marinobacter adhaerens HP15 around HP15_645

Experiment: L-Malic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_644 and HP15_645 are separated by 355 nucleotidesHP15_645 and HP15_646 are separated by 232 nucleotidesHP15_646 and HP15_647 are separated by 153 nucleotides HP15_644: HP15_644 - conserved hypothetical protein, secreted, at 667,399 to 668,142 _644 HP15_645: HP15_645 - conserved hypothetical protein, at 668,498 to 669,187 _645 HP15_646: HP15_646 - hypothetical protein, at 669,420 to 669,770 _646 HP15_647: HP15_647 - conserved hypothetical protein, secreted, at 669,924 to 670,652 _647 Position (kb) 668 669 670Strain fitness (log2 ratio) -2 -1 0 1at 667.710 kb on + strand, within HP15_644at 667.761 kb on - strand, within HP15_644at 667.761 kb on - strand, within HP15_644at 667.768 kb on + strand, within HP15_644at 667.793 kb on + strand, within HP15_644at 667.844 kb on + strand, within HP15_644at 667.880 kb on - strand, within HP15_644at 667.973 kb on - strand, within HP15_644at 667.999 kb on - strand, within HP15_644at 668.021 kb on + strand, within HP15_644at 668.021 kb on + strand, within HP15_644at 668.028 kb on + strand, within HP15_644at 668.028 kb on + strand, within HP15_644at 668.028 kb on + strand, within HP15_644at 668.029 kb on - strand, within HP15_644at 668.029 kb on - strand, within HP15_644at 668.029 kb on - strand, within HP15_644at 668.029 kb on - strand, within HP15_644at 668.029 kb on - strand, within HP15_644at 668.249 kb on + strandat 668.249 kb on + strandat 668.283 kb on + strandat 668.462 kb on - strandat 668.565 kb on + strandat 668.565 kb on + strandat 668.573 kb on - strand, within HP15_645at 668.679 kb on + strand, within HP15_645at 668.684 kb on + strand, within HP15_645at 668.694 kb on + strand, within HP15_645at 668.724 kb on - strand, within HP15_645at 668.767 kb on - strand, within HP15_645at 668.767 kb on - strand, within HP15_645at 668.767 kb on - strand, within HP15_645at 668.767 kb on - strand, within HP15_645at 668.860 kb on - strand, within HP15_645at 668.860 kb on - strand, within HP15_645at 669.023 kb on + strand, within HP15_645at 669.278 kb on + strandat 669.278 kb on + strandat 669.286 kb on + strandat 669.286 kb on - strandat 669.329 kb on + strandat 669.364 kb on + strandat 669.427 kb on + strandat 669.483 kb on + strand, within HP15_646at 669.483 kb on + strand, within HP15_646at 669.491 kb on - strand, within HP15_646at 669.564 kb on - strand, within HP15_646at 669.705 kb on - strand, within HP15_646at 669.737 kb on + strandat 669.798 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic
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667,710 + HP15_644 0.42 -0.6
667,761 - HP15_644 0.49 -0.7
667,761 - HP15_644 0.49 -0.0
667,768 + HP15_644 0.50 +0.3
667,793 + HP15_644 0.53 +0.8
667,844 + HP15_644 0.60 +0.5
667,880 - HP15_644 0.65 +0.6
667,973 - HP15_644 0.77 +0.2
667,999 - HP15_644 0.81 -0.2
668,021 + HP15_644 0.84 +0.4
668,021 + HP15_644 0.84 -0.4
668,028 + HP15_644 0.85 +0.0
668,028 + HP15_644 0.85 -0.4
668,028 + HP15_644 0.85 +0.6
668,029 - HP15_644 0.85 +1.1
668,029 - HP15_644 0.85 -2.5
668,029 - HP15_644 0.85 -0.2
668,029 - HP15_644 0.85 +1.1
668,029 - HP15_644 0.85 -0.6
668,249 + +0.0
668,249 + -0.1
668,283 + -0.5
668,462 - -0.0
668,565 + +0.0
668,565 + -0.4
668,573 - HP15_645 0.11 +0.3
668,679 + HP15_645 0.26 +0.7
668,684 + HP15_645 0.27 -0.2
668,694 + HP15_645 0.28 -1.0
668,724 - HP15_645 0.33 +0.3
668,767 - HP15_645 0.39 -0.7
668,767 - HP15_645 0.39 +0.2
668,767 - HP15_645 0.39 +1.3
668,767 - HP15_645 0.39 +1.1
668,860 - HP15_645 0.52 +0.5
668,860 - HP15_645 0.52 -0.7
669,023 + HP15_645 0.76 +0.2
669,278 + -0.8
669,278 + -1.3
669,286 + -0.2
669,286 - -0.2
669,329 + +1.3
669,364 + -1.1
669,427 + -0.1
669,483 + HP15_646 0.18 +0.8
669,483 + HP15_646 0.18 +0.5
669,491 - HP15_646 0.20 -1.0
669,564 - HP15_646 0.41 -1.6
669,705 - HP15_646 0.81 -2.6
669,737 + -1.0
669,798 + +0.8

Or see this region's nucleotide sequence