Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g2

Experiment: L-Malic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g1 and HP15_p187g2 overlap by 4 nucleotidesHP15_p187g2 and HP15_p187g3 overlap by 1 nucleotides HP15_p187g1: HP15_p187g1 - repeat-containing protein, at 47 to 769 _p187g1 HP15_p187g2: HP15_p187g2 - conserved hypothetical protein, secreted, at 766 to 1,227 _p187g2 HP15_p187g3: HP15_p187g3 - conserved hypothetical protein, secreted, at 1,227 to 2,045 _p187g3 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1at 0.079 kb on + strandat 0.116 kb on - strandat 0.163 kb on - strand, within HP15_p187g1at 0.163 kb on - strand, within HP15_p187g1at 1.674 kb on + strand, within HP15_p187g3at 2.057 kb on - strandat 2.090 kb on + strandat 2.098 kb on - strandat 2.126 kb on + strandat 2.140 kb on + strandat 2.149 kb on + strandat 2.157 kb on - strandat 2.170 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic
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79 + +0.7
116 - +0.4
163 - HP15_p187g1 0.16 -0.5
163 - HP15_p187g1 0.16 -1.1
1,674 + HP15_p187g3 0.55 -1.0
2,057 - -1.4
2,090 + -0.8
2,098 - +0.7
2,126 + +0.1
2,140 + -0.8
2,149 + +0.3
2,157 - +0.2
2,170 + -1.9

Or see this region's nucleotide sequence