Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01260 and PGA1_262p01270 are separated by 37 nucleotides PGA1_262p01270 and PGA1_262p01280 are separated by 2 nucleotides PGA1_262p01280 and PGA1_262p01290 are separated by 97 nucleotides
PGA1_262p01260: PGA1_262p01260 - copper-containing nitrite reductase NirK, at 137,242 to 138,465
_262p01260
PGA1_262p01270: PGA1_262p01270 - Uncharacterized conserved protein, at 138,503 to 139,261
_262p01270
PGA1_262p01280: PGA1_262p01280 - transcriptional regulator, TetR family, at 139,264 to 139,872
_262p01280
PGA1_262p01290: PGA1_262p01290 - transcriptional regulator, AraC family, at 139,970 to 140,977
_262p01290
Position (kb) 138
139
140 Strain fitness (log2 ratio) -2
-1
0
1
2 at 137.830 kb on + strand, within PGA1_262p01260 at 137.979 kb on + strand, within PGA1_262p01260 at 137.987 kb on - strand, within PGA1_262p01260 at 138.061 kb on - strand, within PGA1_262p01260 at 138.344 kb on + strand at 138.383 kb on - strand at 138.827 kb on - strand, within PGA1_262p01270 at 138.827 kb on - strand, within PGA1_262p01270 at 138.850 kb on - strand, within PGA1_262p01270 at 139.092 kb on - strand, within PGA1_262p01270 at 139.151 kb on + strand, within PGA1_262p01270 at 139.579 kb on + strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.770 kb on - strand, within PGA1_262p01280 at 140.074 kb on - strand, within PGA1_262p01290 at 140.079 kb on - strand, within PGA1_262p01290 at 140.152 kb on + strand, within PGA1_262p01290 at 140.215 kb on - strand, within PGA1_262p01290 at 140.215 kb on - strand, within PGA1_262p01290
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 137,830 + PGA1_262p01260 0.48 +0.4 137,979 + PGA1_262p01260 0.60 +0.3 137,987 - PGA1_262p01260 0.61 -1.0 138,061 - PGA1_262p01260 0.67 +0.6 138,344 + +0.4 138,383 - -0.4 138,827 - PGA1_262p01270 0.43 +0.6 138,827 - PGA1_262p01270 0.43 +0.3 138,850 - PGA1_262p01270 0.46 +1.9 139,092 - PGA1_262p01270 0.78 +0.1 139,151 + PGA1_262p01270 0.85 +1.4 139,579 + PGA1_262p01280 0.52 -0.3 139,734 - PGA1_262p01280 0.77 -0.1 139,734 - PGA1_262p01280 0.77 +1.1 139,734 - PGA1_262p01280 0.77 +1.4 139,770 - PGA1_262p01280 0.83 -2.2 140,074 - PGA1_262p01290 0.10 +0.3 140,079 - PGA1_262p01290 0.11 -2.1 140,152 + PGA1_262p01290 0.18 +0.6 140,215 - PGA1_262p01290 0.24 -0.1 140,215 - PGA1_262p01290 0.24 -0.0
Or see this region's nucleotide sequence