Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01220 and PGA1_262p01230 are separated by 12 nucleotides PGA1_262p01230 and PGA1_262p01240 are separated by 130 nucleotides PGA1_262p01240 and PGA1_262p01250 are separated by 74 nucleotides PGA1_262p01250 and PGA1_262p01260 are separated by 203 nucleotides
PGA1_262p01220: PGA1_262p01220 - nitric oxide reductase subunit B, at 134,078 to 135,436
_262p01220
PGA1_262p01230: PGA1_262p01230 - nitric oxide reductase subunit C, at 135,449 to 135,901
_262p01230
PGA1_262p01240: PGA1_262p01240 - hydrid cluster protein-associated redox disulfide domain, at 136,032 to 136,259
_262p01240
PGA1_262p01250: PGA1_262p01250 - transcriptional regulator, crp family, at 136,334 to 137,038
_262p01250
PGA1_262p01260: PGA1_262p01260 - copper-containing nitrite reductase NirK, at 137,242 to 138,465
_262p01260
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 135.446 kb on + strand at 135.454 kb on - strand at 135.454 kb on - strand at 135.473 kb on + strand at 135.746 kb on - strand, within PGA1_262p01230 at 135.897 kb on + strand at 135.903 kb on + strand at 135.910 kb on - strand at 136.009 kb on - strand at 136.153 kb on - strand, within PGA1_262p01240 at 136.225 kb on + strand, within PGA1_262p01240 at 136.298 kb on + strand at 136.304 kb on + strand at 136.304 kb on + strand at 136.317 kb on - strand at 136.364 kb on - strand at 136.582 kb on + strand, within PGA1_262p01250 at 136.610 kb on + strand, within PGA1_262p01250 at 136.814 kb on - strand, within PGA1_262p01250 at 136.950 kb on + strand, within PGA1_262p01250 at 137.313 kb on - strand at 137.830 kb on + strand, within PGA1_262p01260 at 137.979 kb on + strand, within PGA1_262p01260 at 137.987 kb on - strand, within PGA1_262p01260
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 135,446 + +0.7 135,454 - +0.1 135,454 - +0.1 135,473 + +0.1 135,746 - PGA1_262p01230 0.66 -0.3 135,897 + +0.9 135,903 + -0.2 135,910 - +1.5 136,009 - +1.8 136,153 - PGA1_262p01240 0.53 +0.6 136,225 + PGA1_262p01240 0.85 -0.7 136,298 + -2.4 136,304 + +0.6 136,304 + +0.6 136,317 - -0.6 136,364 - -0.1 136,582 + PGA1_262p01250 0.35 -0.5 136,610 + PGA1_262p01250 0.39 +2.9 136,814 - PGA1_262p01250 0.68 +0.5 136,950 + PGA1_262p01250 0.87 +1.1 137,313 - -1.7 137,830 + PGA1_262p01260 0.48 +0.4 137,979 + PGA1_262p01260 0.60 +0.3 137,987 - PGA1_262p01260 0.61 -1.0
Or see this region's nucleotide sequence