Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00850 and PGA1_262p00860 are separated by 297 nucleotides PGA1_262p00860 and PGA1_262p00870 are separated by 42 nucleotides PGA1_262p00870 and PGA1_262p00880 are separated by 4 nucleotides
PGA1_262p00850: PGA1_262p00850 - putative sodium dependent symporter, at 94,642 to 96,099
_262p00850
PGA1_262p00860: PGA1_262p00860 - Uncharacterized conserved protein, at 96,397 to 96,855
_262p00860
PGA1_262p00870: PGA1_262p00870 - ABC transporter, extracellular solute-binding protein, at 96,898 to 98,499
_262p00870
PGA1_262p00880: PGA1_262p00880 - ABC transporter, integral inner membrane component, at 98,504 to 99,547
_262p00880
Position (kb) 96
97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2 at 96.375 kb on + strand at 97.228 kb on + strand, within PGA1_262p00870 at 97.296 kb on + strand, within PGA1_262p00870 at 97.304 kb on - strand, within PGA1_262p00870 at 97.404 kb on - strand, within PGA1_262p00870 at 97.458 kb on - strand, within PGA1_262p00870 at 97.605 kb on + strand, within PGA1_262p00870 at 97.803 kb on - strand, within PGA1_262p00870 at 97.807 kb on + strand, within PGA1_262p00870 at 97.807 kb on + strand, within PGA1_262p00870 at 97.880 kb on - strand, within PGA1_262p00870 at 98.142 kb on + strand, within PGA1_262p00870 at 98.189 kb on - strand, within PGA1_262p00870 at 98.276 kb on - strand, within PGA1_262p00870 at 98.790 kb on + strand, within PGA1_262p00880 at 98.793 kb on - strand, within PGA1_262p00880 at 98.873 kb on + strand, within PGA1_262p00880 at 98.999 kb on - strand, within PGA1_262p00880 at 99.166 kb on + strand, within PGA1_262p00880 at 99.222 kb on + strand, within PGA1_262p00880 at 99.223 kb on + strand, within PGA1_262p00880 at 99.356 kb on + strand, within PGA1_262p00880 at 99.356 kb on + strand, within PGA1_262p00880 at 99.364 kb on - strand, within PGA1_262p00880 at 99.369 kb on - strand, within PGA1_262p00880
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 96,375 + -1.0 97,228 + PGA1_262p00870 0.21 +0.1 97,296 + PGA1_262p00870 0.25 -0.7 97,304 - PGA1_262p00870 0.25 +0.6 97,404 - PGA1_262p00870 0.32 +0.6 97,458 - PGA1_262p00870 0.35 +1.1 97,605 + PGA1_262p00870 0.44 +0.3 97,803 - PGA1_262p00870 0.56 +0.8 97,807 + PGA1_262p00870 0.57 +0.5 97,807 + PGA1_262p00870 0.57 +2.6 97,880 - PGA1_262p00870 0.61 +1.3 98,142 + PGA1_262p00870 0.78 -1.0 98,189 - PGA1_262p00870 0.81 -1.3 98,276 - PGA1_262p00870 0.86 +1.3 98,790 + PGA1_262p00880 0.27 +0.5 98,793 - PGA1_262p00880 0.28 -0.9 98,873 + PGA1_262p00880 0.35 -0.5 98,999 - PGA1_262p00880 0.47 +2.0 99,166 + PGA1_262p00880 0.63 -1.9 99,222 + PGA1_262p00880 0.69 -0.3 99,223 + PGA1_262p00880 0.69 +0.8 99,356 + PGA1_262p00880 0.82 +0.4 99,356 + PGA1_262p00880 0.82 +0.1 99,364 - PGA1_262p00880 0.82 -0.5 99,369 - PGA1_262p00880 0.83 +0.1
Or see this region's nucleotide sequence