Strain Fitness in Marinobacter adhaerens HP15 around HP15_3582

Experiment: L-Malic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3581 and HP15_3582 are separated by 14 nucleotidesHP15_3582 and HP15_3583 overlap by 1 nucleotidesHP15_3583 and HP15_3584 are separated by 5 nucleotides HP15_3581: HP15_3581 - iron ABC transporter periplasmic binding protein, at 3,772,296 to 3,773,306 _3581 HP15_3582: HP15_3582 - transport system permease protein, at 3,773,321 to 3,774,301 _3582 HP15_3583: HP15_3583 - iron compound ABC transporter, ATP-binding protein, at 3,774,301 to 3,775,089 _3583 HP15_3584: HP15_3584 - transcriptional regulator, LysR family protein, at 3,775,095 to 3,776,042 _3584 Position (kb) 3773 3774 3775Strain fitness (log2 ratio) -2 -1 0 1 2at 3772.335 kb on + strandat 3772.335 kb on + strandat 3772.335 kb on + strandat 3772.343 kb on - strandat 3772.343 kb on - strandat 3772.343 kb on - strandat 3772.343 kb on - strandat 3772.454 kb on + strand, within HP15_3581at 3772.499 kb on - strand, within HP15_3581at 3772.579 kb on - strand, within HP15_3581at 3772.623 kb on - strand, within HP15_3581at 3772.806 kb on + strand, within HP15_3581at 3772.808 kb on + strand, within HP15_3581at 3772.823 kb on + strand, within HP15_3581at 3772.823 kb on + strand, within HP15_3581at 3772.823 kb on + strand, within HP15_3581at 3772.824 kb on + strand, within HP15_3581at 3772.831 kb on - strand, within HP15_3581at 3772.831 kb on - strand, within HP15_3581at 3772.831 kb on - strand, within HP15_3581at 3772.831 kb on - strand, within HP15_3581at 3772.831 kb on - strand, within HP15_3581at 3772.831 kb on - strand, within HP15_3581at 3772.841 kb on - strand, within HP15_3581at 3772.948 kb on + strand, within HP15_3581at 3772.966 kb on - strand, within HP15_3581at 3772.966 kb on - strand, within HP15_3581at 3773.039 kb on - strand, within HP15_3581at 3773.174 kb on - strand, within HP15_3581at 3773.269 kb on + strandat 3773.269 kb on + strandat 3773.296 kb on + strandat 3773.334 kb on + strandat 3773.334 kb on + strandat 3773.339 kb on + strandat 3773.339 kb on + strandat 3773.342 kb on - strandat 3773.342 kb on - strandat 3773.342 kb on - strandat 3773.347 kb on - strandat 3773.347 kb on - strandat 3773.360 kb on - strandat 3773.397 kb on + strandat 3773.437 kb on + strand, within HP15_3582at 3773.437 kb on + strand, within HP15_3582at 3773.714 kb on - strand, within HP15_3582at 3773.721 kb on + strand, within HP15_3582at 3773.794 kb on + strand, within HP15_3582at 3773.800 kb on + strand, within HP15_3582at 3773.808 kb on - strand, within HP15_3582at 3773.839 kb on - strand, within HP15_3582at 3773.864 kb on + strand, within HP15_3582at 3773.958 kb on + strand, within HP15_3582at 3773.966 kb on - strand, within HP15_3582at 3773.966 kb on - strand, within HP15_3582at 3774.069 kb on - strand, within HP15_3582at 3774.078 kb on - strand, within HP15_3582at 3774.157 kb on + strand, within HP15_3582at 3774.311 kb on + strandat 3774.356 kb on + strandat 3774.356 kb on + strandat 3774.470 kb on - strand, within HP15_3583at 3774.483 kb on + strand, within HP15_3583at 3774.491 kb on - strand, within HP15_3583at 3774.582 kb on - strand, within HP15_3583at 3774.765 kb on - strand, within HP15_3583at 3774.784 kb on + strand, within HP15_3583at 3774.827 kb on - strand, within HP15_3583at 3774.843 kb on - strand, within HP15_3583at 3774.886 kb on - strand, within HP15_3583at 3774.891 kb on - strand, within HP15_3583at 3774.904 kb on + strand, within HP15_3583at 3774.982 kb on + strand, within HP15_3583at 3774.992 kb on + strand, within HP15_3583at 3774.992 kb on + strand, within HP15_3583at 3774.992 kb on + strand, within HP15_3583at 3774.992 kb on + strand, within HP15_3583at 3774.992 kb on + strand, within HP15_3583at 3774.999 kb on + strand, within HP15_3583at 3775.000 kb on - strand, within HP15_3583at 3775.000 kb on - strand, within HP15_3583at 3775.017 kb on - strandat 3775.038 kb on - strandat 3775.077 kb on - strandat 3775.092 kb on - strandat 3775.294 kb on - strand, within HP15_3584

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic
remove
3,772,335 + -0.0
3,772,335 + +1.2
3,772,335 + +0.5
3,772,343 - -1.4
3,772,343 - +1.0
3,772,343 - +0.2
3,772,343 - +1.2
3,772,454 + HP15_3581 0.16 -0.2
3,772,499 - HP15_3581 0.20 +0.7
3,772,579 - HP15_3581 0.28 -1.8
3,772,623 - HP15_3581 0.32 +0.9
3,772,806 + HP15_3581 0.50 -0.9
3,772,808 + HP15_3581 0.51 -0.3
3,772,823 + HP15_3581 0.52 +0.6
3,772,823 + HP15_3581 0.52 +0.7
3,772,823 + HP15_3581 0.52 -0.5
3,772,824 + HP15_3581 0.52 -1.7
3,772,831 - HP15_3581 0.53 +0.8
3,772,831 - HP15_3581 0.53 -0.1
3,772,831 - HP15_3581 0.53 -0.4
3,772,831 - HP15_3581 0.53 -1.1
3,772,831 - HP15_3581 0.53 +1.0
3,772,831 - HP15_3581 0.53 -0.1
3,772,841 - HP15_3581 0.54 -0.0
3,772,948 + HP15_3581 0.64 -0.4
3,772,966 - HP15_3581 0.66 -0.0
3,772,966 - HP15_3581 0.66 -0.1
3,773,039 - HP15_3581 0.73 -0.4
3,773,174 - HP15_3581 0.87 -2.0
3,773,269 + +1.4
3,773,269 + -2.7
3,773,296 + -0.0
3,773,334 + +0.0
3,773,334 + -0.6
3,773,339 + +0.2
3,773,339 + +0.8
3,773,342 - -0.3
3,773,342 - +1.5
3,773,342 - -0.0
3,773,347 - +0.1
3,773,347 - -0.5
3,773,360 - +1.8
3,773,397 + +0.1
3,773,437 + HP15_3582 0.12 +1.7
3,773,437 + HP15_3582 0.12 +0.6
3,773,714 - HP15_3582 0.40 +0.5
3,773,721 + HP15_3582 0.41 +0.5
3,773,794 + HP15_3582 0.48 +0.8
3,773,800 + HP15_3582 0.49 -1.6
3,773,808 - HP15_3582 0.50 +1.3
3,773,839 - HP15_3582 0.53 +0.0
3,773,864 + HP15_3582 0.55 -0.7
3,773,958 + HP15_3582 0.65 +2.1
3,773,966 - HP15_3582 0.66 +0.2
3,773,966 - HP15_3582 0.66 +0.1
3,774,069 - HP15_3582 0.76 -0.0
3,774,078 - HP15_3582 0.77 +2.0
3,774,157 + HP15_3582 0.85 +0.4
3,774,311 + +1.0
3,774,356 + +0.5
3,774,356 + +1.1
3,774,470 - HP15_3583 0.21 -1.7
3,774,483 + HP15_3583 0.23 -0.9
3,774,491 - HP15_3583 0.24 -0.4
3,774,582 - HP15_3583 0.36 -0.4
3,774,765 - HP15_3583 0.59 -0.9
3,774,784 + HP15_3583 0.61 +0.2
3,774,827 - HP15_3583 0.67 -0.4
3,774,843 - HP15_3583 0.69 +0.5
3,774,886 - HP15_3583 0.74 -0.0
3,774,891 - HP15_3583 0.75 -0.5
3,774,904 + HP15_3583 0.76 -0.0
3,774,982 + HP15_3583 0.86 +0.1
3,774,992 + HP15_3583 0.88 +0.1
3,774,992 + HP15_3583 0.88 +1.4
3,774,992 + HP15_3583 0.88 +1.1
3,774,992 + HP15_3583 0.88 -0.4
3,774,992 + HP15_3583 0.88 +0.7
3,774,999 + HP15_3583 0.88 +0.9
3,775,000 - HP15_3583 0.89 +0.5
3,775,000 - HP15_3583 0.89 -0.2
3,775,017 - +1.2
3,775,038 - -0.2
3,775,077 - +0.1
3,775,092 - +0.5
3,775,294 - HP15_3584 0.21 -1.5

Or see this region's nucleotide sequence