Experiment: L-Malic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3581 and HP15_3582 are separated by 14 nucleotides HP15_3582 and HP15_3583 overlap by 1 nucleotides HP15_3583 and HP15_3584 are separated by 5 nucleotides
HP15_3581: HP15_3581 - iron ABC transporter periplasmic binding protein, at 3,772,296 to 3,773,306
_3581
HP15_3582: HP15_3582 - transport system permease protein, at 3,773,321 to 3,774,301
_3582
HP15_3583: HP15_3583 - iron compound ABC transporter, ATP-binding protein, at 3,774,301 to 3,775,089
_3583
HP15_3584: HP15_3584 - transcriptional regulator, LysR family protein, at 3,775,095 to 3,776,042
_3584
Position (kb)
3773
3774
3775 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3772.335 kb on + strand at 3772.335 kb on + strand at 3772.335 kb on + strand at 3772.343 kb on - strand at 3772.343 kb on - strand at 3772.343 kb on - strand at 3772.343 kb on - strand at 3772.454 kb on + strand, within HP15_3581 at 3772.499 kb on - strand, within HP15_3581 at 3772.579 kb on - strand, within HP15_3581 at 3772.623 kb on - strand, within HP15_3581 at 3772.806 kb on + strand, within HP15_3581 at 3772.808 kb on + strand, within HP15_3581 at 3772.823 kb on + strand, within HP15_3581 at 3772.823 kb on + strand, within HP15_3581 at 3772.823 kb on + strand, within HP15_3581 at 3772.824 kb on + strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.841 kb on - strand, within HP15_3581 at 3772.948 kb on + strand, within HP15_3581 at 3772.966 kb on - strand, within HP15_3581 at 3772.966 kb on - strand, within HP15_3581 at 3773.039 kb on - strand, within HP15_3581 at 3773.174 kb on - strand, within HP15_3581 at 3773.269 kb on + strand at 3773.269 kb on + strand at 3773.296 kb on + strand at 3773.334 kb on + strand at 3773.334 kb on + strand at 3773.339 kb on + strand at 3773.339 kb on + strand at 3773.342 kb on - strand at 3773.342 kb on - strand at 3773.342 kb on - strand at 3773.347 kb on - strand at 3773.347 kb on - strand at 3773.360 kb on - strand at 3773.397 kb on + strand at 3773.437 kb on + strand, within HP15_3582 at 3773.437 kb on + strand, within HP15_3582 at 3773.714 kb on - strand, within HP15_3582 at 3773.721 kb on + strand, within HP15_3582 at 3773.794 kb on + strand, within HP15_3582 at 3773.800 kb on + strand, within HP15_3582 at 3773.808 kb on - strand, within HP15_3582 at 3773.839 kb on - strand, within HP15_3582 at 3773.864 kb on + strand, within HP15_3582 at 3773.958 kb on + strand, within HP15_3582 at 3773.966 kb on - strand, within HP15_3582 at 3773.966 kb on - strand, within HP15_3582 at 3774.069 kb on - strand, within HP15_3582 at 3774.078 kb on - strand, within HP15_3582 at 3774.157 kb on + strand, within HP15_3582 at 3774.311 kb on + strand at 3774.356 kb on + strand at 3774.356 kb on + strand at 3774.470 kb on - strand, within HP15_3583 at 3774.483 kb on + strand, within HP15_3583 at 3774.491 kb on - strand, within HP15_3583 at 3774.582 kb on - strand, within HP15_3583 at 3774.765 kb on - strand, within HP15_3583 at 3774.784 kb on + strand, within HP15_3583 at 3774.827 kb on - strand, within HP15_3583 at 3774.843 kb on - strand, within HP15_3583 at 3774.886 kb on - strand, within HP15_3583 at 3774.891 kb on - strand, within HP15_3583 at 3774.904 kb on + strand, within HP15_3583 at 3774.982 kb on + strand, within HP15_3583 at 3774.992 kb on + strand, within HP15_3583 at 3774.992 kb on + strand, within HP15_3583 at 3774.992 kb on + strand, within HP15_3583 at 3774.992 kb on + strand, within HP15_3583 at 3774.992 kb on + strand, within HP15_3583 at 3774.999 kb on + strand, within HP15_3583 at 3775.000 kb on - strand, within HP15_3583 at 3775.000 kb on - strand, within HP15_3583 at 3775.017 kb on - strand at 3775.038 kb on - strand at 3775.077 kb on - strand at 3775.092 kb on - strand at 3775.294 kb on - strand, within HP15_3584
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic remove 3,772,335 + -0.0 3,772,335 + +1.2 3,772,335 + +0.5 3,772,343 - -1.4 3,772,343 - +1.0 3,772,343 - +0.2 3,772,343 - +1.2 3,772,454 + HP15_3581 0.16 -0.2 3,772,499 - HP15_3581 0.20 +0.7 3,772,579 - HP15_3581 0.28 -1.8 3,772,623 - HP15_3581 0.32 +0.9 3,772,806 + HP15_3581 0.50 -0.9 3,772,808 + HP15_3581 0.51 -0.3 3,772,823 + HP15_3581 0.52 +0.6 3,772,823 + HP15_3581 0.52 +0.7 3,772,823 + HP15_3581 0.52 -0.5 3,772,824 + HP15_3581 0.52 -1.7 3,772,831 - HP15_3581 0.53 +0.8 3,772,831 - HP15_3581 0.53 -0.1 3,772,831 - HP15_3581 0.53 -0.4 3,772,831 - HP15_3581 0.53 -1.1 3,772,831 - HP15_3581 0.53 +1.0 3,772,831 - HP15_3581 0.53 -0.1 3,772,841 - HP15_3581 0.54 -0.0 3,772,948 + HP15_3581 0.64 -0.4 3,772,966 - HP15_3581 0.66 -0.0 3,772,966 - HP15_3581 0.66 -0.1 3,773,039 - HP15_3581 0.73 -0.4 3,773,174 - HP15_3581 0.87 -2.0 3,773,269 + +1.4 3,773,269 + -2.7 3,773,296 + -0.0 3,773,334 + +0.0 3,773,334 + -0.6 3,773,339 + +0.2 3,773,339 + +0.8 3,773,342 - -0.3 3,773,342 - +1.5 3,773,342 - -0.0 3,773,347 - +0.1 3,773,347 - -0.5 3,773,360 - +1.8 3,773,397 + +0.1 3,773,437 + HP15_3582 0.12 +1.7 3,773,437 + HP15_3582 0.12 +0.6 3,773,714 - HP15_3582 0.40 +0.5 3,773,721 + HP15_3582 0.41 +0.5 3,773,794 + HP15_3582 0.48 +0.8 3,773,800 + HP15_3582 0.49 -1.6 3,773,808 - HP15_3582 0.50 +1.3 3,773,839 - HP15_3582 0.53 +0.0 3,773,864 + HP15_3582 0.55 -0.7 3,773,958 + HP15_3582 0.65 +2.1 3,773,966 - HP15_3582 0.66 +0.2 3,773,966 - HP15_3582 0.66 +0.1 3,774,069 - HP15_3582 0.76 -0.0 3,774,078 - HP15_3582 0.77 +2.0 3,774,157 + HP15_3582 0.85 +0.4 3,774,311 + +1.0 3,774,356 + +0.5 3,774,356 + +1.1 3,774,470 - HP15_3583 0.21 -1.7 3,774,483 + HP15_3583 0.23 -0.9 3,774,491 - HP15_3583 0.24 -0.4 3,774,582 - HP15_3583 0.36 -0.4 3,774,765 - HP15_3583 0.59 -0.9 3,774,784 + HP15_3583 0.61 +0.2 3,774,827 - HP15_3583 0.67 -0.4 3,774,843 - HP15_3583 0.69 +0.5 3,774,886 - HP15_3583 0.74 -0.0 3,774,891 - HP15_3583 0.75 -0.5 3,774,904 + HP15_3583 0.76 -0.0 3,774,982 + HP15_3583 0.86 +0.1 3,774,992 + HP15_3583 0.88 +0.1 3,774,992 + HP15_3583 0.88 +1.4 3,774,992 + HP15_3583 0.88 +1.1 3,774,992 + HP15_3583 0.88 -0.4 3,774,992 + HP15_3583 0.88 +0.7 3,774,999 + HP15_3583 0.88 +0.9 3,775,000 - HP15_3583 0.89 +0.5 3,775,000 - HP15_3583 0.89 -0.2 3,775,017 - +1.2 3,775,038 - -0.2 3,775,077 - +0.1 3,775,092 - +0.5 3,775,294 - HP15_3584 0.21 -1.5
Or see this region's nucleotide sequence