Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35020

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c35000 and PGA1_c35010 are separated by 102 nucleotidesPGA1_c35010 and PGA1_c35020 are separated by 9 nucleotidesPGA1_c35020 and PGA1_c35030 are separated by 154 nucleotidesPGA1_c35030 and PGA1_c35040 overlap by 4 nucleotides PGA1_c35000: PGA1_c35000 - DNA mismatch repair protein MutS, at 3,672,204 to 3,674,837 _c35000 PGA1_c35010: PGA1_c35010 - protein GrpE, at 3,674,940 to 3,675,503 _c35010 PGA1_c35020: PGA1_c35020 - heat-inducible transcription repressor HrcA, at 3,675,513 to 3,676,589 _c35020 PGA1_c35030: PGA1_c35030 - ribonuclease PH, at 3,676,744 to 3,677,457 _c35030 PGA1_c35040: PGA1_c35040 - nucleoside-triphosphatase RdgB, at 3,677,454 to 3,678,068 _c35040 Position (kb) 3675 3676 3677Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3674.519 kb on - strand, within PGA1_c35000at 3674.558 kb on + strand, within PGA1_c35000at 3674.558 kb on + strand, within PGA1_c35000at 3674.701 kb on - strandat 3674.754 kb on + strandat 3674.762 kb on - strandat 3674.862 kb on - strandat 3675.511 kb on - strandat 3675.553 kb on + strandat 3675.594 kb on + strandat 3675.627 kb on - strand, within PGA1_c35020at 3675.642 kb on + strand, within PGA1_c35020at 3675.642 kb on + strand, within PGA1_c35020at 3675.650 kb on - strand, within PGA1_c35020at 3675.664 kb on - strand, within PGA1_c35020at 3675.716 kb on + strand, within PGA1_c35020at 3675.724 kb on - strand, within PGA1_c35020at 3675.814 kb on + strand, within PGA1_c35020at 3675.926 kb on - strand, within PGA1_c35020at 3675.936 kb on - strand, within PGA1_c35020at 3675.994 kb on + strand, within PGA1_c35020at 3676.002 kb on - strand, within PGA1_c35020at 3676.031 kb on + strand, within PGA1_c35020at 3676.039 kb on - strand, within PGA1_c35020at 3676.102 kb on + strand, within PGA1_c35020at 3676.186 kb on - strand, within PGA1_c35020at 3676.196 kb on + strand, within PGA1_c35020at 3676.198 kb on + strand, within PGA1_c35020at 3676.204 kb on - strand, within PGA1_c35020at 3676.206 kb on + strand, within PGA1_c35020at 3676.209 kb on - strand, within PGA1_c35020at 3676.231 kb on + strand, within PGA1_c35020at 3676.247 kb on - strand, within PGA1_c35020at 3676.321 kb on + strand, within PGA1_c35020at 3676.359 kb on - strand, within PGA1_c35020at 3676.378 kb on + strand, within PGA1_c35020at 3676.386 kb on - strand, within PGA1_c35020at 3676.386 kb on - strand, within PGA1_c35020at 3676.393 kb on + strand, within PGA1_c35020at 3676.439 kb on + strand, within PGA1_c35020at 3676.481 kb on - strand, within PGA1_c35020at 3676.533 kb on + strandat 3676.579 kb on + strandat 3676.625 kb on + strandat 3676.635 kb on - strandat 3676.639 kb on + strandat 3676.639 kb on + strandat 3676.647 kb on - strandat 3676.701 kb on - strandat 3676.712 kb on + strandat 3676.757 kb on + strandat 3676.824 kb on - strand, within PGA1_c35030at 3676.828 kb on - strand, within PGA1_c35030at 3676.840 kb on + strand, within PGA1_c35030at 3676.847 kb on + strand, within PGA1_c35030at 3676.855 kb on - strand, within PGA1_c35030at 3676.855 kb on - strand, within PGA1_c35030at 3676.855 kb on - strand, within PGA1_c35030at 3676.868 kb on + strand, within PGA1_c35030at 3676.876 kb on - strand, within PGA1_c35030at 3676.901 kb on + strand, within PGA1_c35030at 3676.927 kb on + strand, within PGA1_c35030at 3677.054 kb on + strand, within PGA1_c35030at 3677.103 kb on + strand, within PGA1_c35030at 3677.156 kb on + strand, within PGA1_c35030at 3677.198 kb on - strand, within PGA1_c35030at 3677.208 kb on + strand, within PGA1_c35030at 3677.208 kb on + strand, within PGA1_c35030at 3677.243 kb on + strand, within PGA1_c35030at 3677.251 kb on - strand, within PGA1_c35030at 3677.251 kb on - strand, within PGA1_c35030at 3677.257 kb on + strand, within PGA1_c35030at 3677.329 kb on - strand, within PGA1_c35030at 3677.334 kb on - strand, within PGA1_c35030at 3677.349 kb on - strand, within PGA1_c35030at 3677.349 kb on - strand, within PGA1_c35030at 3677.349 kb on - strand, within PGA1_c35030at 3677.368 kb on - strand, within PGA1_c35030at 3677.372 kb on + strand, within PGA1_c35030at 3677.388 kb on + strandat 3677.436 kb on + strandat 3677.439 kb on + strandat 3677.444 kb on - strandat 3677.496 kb on + strandat 3677.498 kb on + strandat 3677.504 kb on + strandat 3677.578 kb on + strand, within PGA1_c35040

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,674,519 - PGA1_c35000 0.88 -2.1
3,674,558 + PGA1_c35000 0.89 +0.5
3,674,558 + PGA1_c35000 0.89 -0.1
3,674,701 - +0.4
3,674,754 + -0.6
3,674,762 - -1.6
3,674,862 - +1.5
3,675,511 - +0.6
3,675,553 + +2.8
3,675,594 + +0.9
3,675,627 - PGA1_c35020 0.11 +1.8
3,675,642 + PGA1_c35020 0.12 +1.5
3,675,642 + PGA1_c35020 0.12 -1.7
3,675,650 - PGA1_c35020 0.13 +2.9
3,675,664 - PGA1_c35020 0.14 -1.5
3,675,716 + PGA1_c35020 0.19 +0.4
3,675,724 - PGA1_c35020 0.20 +1.6
3,675,814 + PGA1_c35020 0.28 +0.2
3,675,926 - PGA1_c35020 0.38 -0.4
3,675,936 - PGA1_c35020 0.39 +0.9
3,675,994 + PGA1_c35020 0.45 +1.4
3,676,002 - PGA1_c35020 0.45 -0.8
3,676,031 + PGA1_c35020 0.48 +0.3
3,676,039 - PGA1_c35020 0.49 +1.6
3,676,102 + PGA1_c35020 0.55 -0.5
3,676,186 - PGA1_c35020 0.62 +2.3
3,676,196 + PGA1_c35020 0.63 -0.0
3,676,198 + PGA1_c35020 0.64 +0.9
3,676,204 - PGA1_c35020 0.64 +0.6
3,676,206 + PGA1_c35020 0.64 +0.2
3,676,209 - PGA1_c35020 0.65 -0.6
3,676,231 + PGA1_c35020 0.67 +1.9
3,676,247 - PGA1_c35020 0.68 -0.6
3,676,321 + PGA1_c35020 0.75 -0.7
3,676,359 - PGA1_c35020 0.79 +0.9
3,676,378 + PGA1_c35020 0.80 +0.6
3,676,386 - PGA1_c35020 0.81 +1.0
3,676,386 - PGA1_c35020 0.81 +1.9
3,676,393 + PGA1_c35020 0.82 +0.3
3,676,439 + PGA1_c35020 0.86 +1.1
3,676,481 - PGA1_c35020 0.90 -2.6
3,676,533 + +0.0
3,676,579 + +1.9
3,676,625 + +0.5
3,676,635 - -0.4
3,676,639 + -0.9
3,676,639 + -0.4
3,676,647 - +1.5
3,676,701 - -1.0
3,676,712 + -1.5
3,676,757 + +0.4
3,676,824 - PGA1_c35030 0.11 -0.4
3,676,828 - PGA1_c35030 0.12 +0.1
3,676,840 + PGA1_c35030 0.13 -1.2
3,676,847 + PGA1_c35030 0.14 -1.3
3,676,855 - PGA1_c35030 0.16 -0.3
3,676,855 - PGA1_c35030 0.16 -0.5
3,676,855 - PGA1_c35030 0.16 +2.2
3,676,868 + PGA1_c35030 0.17 +0.5
3,676,876 - PGA1_c35030 0.18 +2.3
3,676,901 + PGA1_c35030 0.22 -0.8
3,676,927 + PGA1_c35030 0.26 +0.4
3,677,054 + PGA1_c35030 0.43 -1.2
3,677,103 + PGA1_c35030 0.50 +0.2
3,677,156 + PGA1_c35030 0.58 -2.3
3,677,198 - PGA1_c35030 0.64 +0.2
3,677,208 + PGA1_c35030 0.65 -0.7
3,677,208 + PGA1_c35030 0.65 -1.3
3,677,243 + PGA1_c35030 0.70 +0.9
3,677,251 - PGA1_c35030 0.71 -1.5
3,677,251 - PGA1_c35030 0.71 +0.4
3,677,257 + PGA1_c35030 0.72 -1.6
3,677,329 - PGA1_c35030 0.82 +1.3
3,677,334 - PGA1_c35030 0.83 +1.1
3,677,349 - PGA1_c35030 0.85 +1.3
3,677,349 - PGA1_c35030 0.85 +0.8
3,677,349 - PGA1_c35030 0.85 -1.1
3,677,368 - PGA1_c35030 0.87 -1.1
3,677,372 + PGA1_c35030 0.88 +0.8
3,677,388 + -0.4
3,677,436 + +1.3
3,677,439 + +0.3
3,677,444 - +0.5
3,677,496 + +1.1
3,677,498 + +0.3
3,677,504 + -2.1
3,677,578 + PGA1_c35040 0.20 +0.1

Or see this region's nucleotide sequence