Strain Fitness in Marinobacter adhaerens HP15 around HP15_3269

Experiment: L-Malic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3268 and HP15_3269 are separated by 7 nucleotidesHP15_3269 and HP15_3270 are separated by 860 nucleotides HP15_3268: HP15_3268 - lipase chaperone, at 3,424,736 to 3,425,845 _3268 HP15_3269: HP15_3269 - membrane protein containing ATP-binding region, ATPase-like domains, at 3,425,853 to 3,427,319 _3269 HP15_3270: HP15_3270 - OmpA/MotB domain protein, at 3,428,180 to 3,429,439 _3270 Position (kb) 3425 3426 3427 3428Strain fitness (log2 ratio) -2 -1 0 1 2at 3424.889 kb on + strand, within HP15_3268at 3425.076 kb on + strand, within HP15_3268at 3425.153 kb on + strand, within HP15_3268at 3425.322 kb on + strand, within HP15_3268at 3425.330 kb on - strand, within HP15_3268at 3425.332 kb on + strand, within HP15_3268at 3425.332 kb on + strand, within HP15_3268at 3425.350 kb on - strand, within HP15_3268at 3425.388 kb on + strand, within HP15_3268at 3425.396 kb on - strand, within HP15_3268at 3425.398 kb on + strand, within HP15_3268at 3425.440 kb on - strand, within HP15_3268at 3425.442 kb on + strand, within HP15_3268at 3425.442 kb on + strand, within HP15_3268at 3425.447 kb on + strand, within HP15_3268at 3425.450 kb on - strand, within HP15_3268at 3425.482 kb on - strand, within HP15_3268at 3425.620 kb on - strand, within HP15_3268at 3425.627 kb on - strand, within HP15_3268at 3425.630 kb on + strand, within HP15_3268at 3425.638 kb on - strand, within HP15_3268at 3425.669 kb on - strand, within HP15_3268at 3425.707 kb on - strand, within HP15_3268at 3425.743 kb on - strandat 3425.798 kb on + strandat 3425.803 kb on + strandat 3425.811 kb on - strandat 3425.822 kb on - strandat 3425.827 kb on - strandat 3425.893 kb on + strandat 3425.939 kb on + strandat 3425.944 kb on + strandat 3425.947 kb on - strandat 3425.957 kb on - strandat 3426.016 kb on + strand, within HP15_3269at 3426.038 kb on + strand, within HP15_3269at 3426.069 kb on - strand, within HP15_3269at 3426.095 kb on - strand, within HP15_3269at 3426.224 kb on + strand, within HP15_3269at 3426.224 kb on + strand, within HP15_3269at 3426.226 kb on + strand, within HP15_3269at 3426.234 kb on - strand, within HP15_3269at 3426.305 kb on + strand, within HP15_3269at 3426.313 kb on - strand, within HP15_3269at 3426.393 kb on - strand, within HP15_3269at 3426.490 kb on - strand, within HP15_3269at 3426.513 kb on - strand, within HP15_3269at 3426.608 kb on - strand, within HP15_3269at 3426.633 kb on - strand, within HP15_3269at 3426.660 kb on - strand, within HP15_3269at 3426.701 kb on + strand, within HP15_3269at 3426.755 kb on - strand, within HP15_3269at 3426.763 kb on - strand, within HP15_3269at 3426.767 kb on - strand, within HP15_3269at 3426.767 kb on - strand, within HP15_3269at 3426.776 kb on + strand, within HP15_3269at 3426.800 kb on - strand, within HP15_3269at 3426.975 kb on + strand, within HP15_3269at 3426.996 kb on + strand, within HP15_3269at 3427.091 kb on + strand, within HP15_3269at 3427.178 kb on + strandat 3427.260 kb on + strandat 3427.393 kb on + strandat 3427.401 kb on - strandat 3427.480 kb on - strandat 3427.507 kb on - strandat 3427.521 kb on - strandat 3427.555 kb on + strandat 3427.582 kb on - strandat 3427.648 kb on + strandat 3427.769 kb on - strandat 3427.771 kb on + strandat 3427.874 kb on + strandat 3427.961 kb on + strandat 3427.969 kb on - strandat 3427.971 kb on + strandat 3427.979 kb on - strandat 3427.993 kb on - strandat 3428.177 kb on + strandat 3428.243 kb on - strandat 3428.305 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic
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3,424,889 + HP15_3268 0.14 +0.7
3,425,076 + HP15_3268 0.31 -0.4
3,425,153 + HP15_3268 0.38 -1.3
3,425,322 + HP15_3268 0.53 -0.3
3,425,330 - HP15_3268 0.54 -0.5
3,425,332 + HP15_3268 0.54 -0.3
3,425,332 + HP15_3268 0.54 -0.3
3,425,350 - HP15_3268 0.55 -0.6
3,425,388 + HP15_3268 0.59 -0.7
3,425,396 - HP15_3268 0.59 +0.2
3,425,398 + HP15_3268 0.60 -0.1
3,425,440 - HP15_3268 0.63 -0.7
3,425,442 + HP15_3268 0.64 -1.8
3,425,442 + HP15_3268 0.64 -0.2
3,425,447 + HP15_3268 0.64 -0.1
3,425,450 - HP15_3268 0.64 -0.3
3,425,482 - HP15_3268 0.67 -0.2
3,425,620 - HP15_3268 0.80 -0.7
3,425,627 - HP15_3268 0.80 -0.9
3,425,630 + HP15_3268 0.81 +0.1
3,425,638 - HP15_3268 0.81 +0.8
3,425,669 - HP15_3268 0.84 +2.2
3,425,707 - HP15_3268 0.87 +0.0
3,425,743 - +0.3
3,425,798 + +0.6
3,425,803 + +0.3
3,425,811 - -0.1
3,425,822 - -1.4
3,425,827 - +0.5
3,425,893 + +1.9
3,425,939 + -0.5
3,425,944 + -0.1
3,425,947 - +0.9
3,425,957 - -0.5
3,426,016 + HP15_3269 0.11 +0.2
3,426,038 + HP15_3269 0.13 -0.3
3,426,069 - HP15_3269 0.15 -0.1
3,426,095 - HP15_3269 0.16 +0.1
3,426,224 + HP15_3269 0.25 +0.1
3,426,224 + HP15_3269 0.25 +0.8
3,426,226 + HP15_3269 0.25 -1.4
3,426,234 - HP15_3269 0.26 -1.3
3,426,305 + HP15_3269 0.31 -1.1
3,426,313 - HP15_3269 0.31 -0.3
3,426,393 - HP15_3269 0.37 -0.2
3,426,490 - HP15_3269 0.43 +0.9
3,426,513 - HP15_3269 0.45 +0.3
3,426,608 - HP15_3269 0.51 +1.0
3,426,633 - HP15_3269 0.53 +1.3
3,426,660 - HP15_3269 0.55 +2.5
3,426,701 + HP15_3269 0.58 -0.1
3,426,755 - HP15_3269 0.61 +0.6
3,426,763 - HP15_3269 0.62 -0.3
3,426,767 - HP15_3269 0.62 +0.3
3,426,767 - HP15_3269 0.62 +0.6
3,426,776 + HP15_3269 0.63 +0.1
3,426,800 - HP15_3269 0.65 +1.6
3,426,975 + HP15_3269 0.76 +0.1
3,426,996 + HP15_3269 0.78 +0.6
3,427,091 + HP15_3269 0.84 +0.9
3,427,178 + -2.3
3,427,260 + +0.2
3,427,393 + -0.6
3,427,401 - +0.6
3,427,480 - -0.6
3,427,507 - -0.7
3,427,521 - +0.5
3,427,555 + -0.2
3,427,582 - +0.9
3,427,648 + +1.9
3,427,769 - +0.1
3,427,771 + -0.0
3,427,874 + +0.8
3,427,961 + -0.3
3,427,969 - -0.3
3,427,971 + -0.7
3,427,979 - -1.0
3,427,993 - -1.4
3,428,177 + -0.4
3,428,243 - +0.4
3,428,305 + +0.9

Or see this region's nucleotide sequence