Experiment: L-Malic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3268 and HP15_3269 are separated by 7 nucleotides HP15_3269 and HP15_3270 are separated by 860 nucleotides
HP15_3268: HP15_3268 - lipase chaperone, at 3,424,736 to 3,425,845
_3268
HP15_3269: HP15_3269 - membrane protein containing ATP-binding region, ATPase-like domains, at 3,425,853 to 3,427,319
_3269
HP15_3270: HP15_3270 - OmpA/MotB domain protein, at 3,428,180 to 3,429,439
_3270
Position (kb)
3425
3426
3427
3428 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3424.889 kb on + strand, within HP15_3268 at 3425.076 kb on + strand, within HP15_3268 at 3425.153 kb on + strand, within HP15_3268 at 3425.322 kb on + strand, within HP15_3268 at 3425.330 kb on - strand, within HP15_3268 at 3425.332 kb on + strand, within HP15_3268 at 3425.332 kb on + strand, within HP15_3268 at 3425.350 kb on - strand, within HP15_3268 at 3425.388 kb on + strand, within HP15_3268 at 3425.396 kb on - strand, within HP15_3268 at 3425.398 kb on + strand, within HP15_3268 at 3425.440 kb on - strand, within HP15_3268 at 3425.442 kb on + strand, within HP15_3268 at 3425.442 kb on + strand, within HP15_3268 at 3425.447 kb on + strand, within HP15_3268 at 3425.450 kb on - strand, within HP15_3268 at 3425.482 kb on - strand, within HP15_3268 at 3425.620 kb on - strand, within HP15_3268 at 3425.627 kb on - strand, within HP15_3268 at 3425.630 kb on + strand, within HP15_3268 at 3425.638 kb on - strand, within HP15_3268 at 3425.669 kb on - strand, within HP15_3268 at 3425.707 kb on - strand, within HP15_3268 at 3425.743 kb on - strand at 3425.798 kb on + strand at 3425.803 kb on + strand at 3425.811 kb on - strand at 3425.822 kb on - strand at 3425.827 kb on - strand at 3425.893 kb on + strand at 3425.939 kb on + strand at 3425.944 kb on + strand at 3425.947 kb on - strand at 3425.957 kb on - strand at 3426.016 kb on + strand, within HP15_3269 at 3426.038 kb on + strand, within HP15_3269 at 3426.069 kb on - strand, within HP15_3269 at 3426.095 kb on - strand, within HP15_3269 at 3426.224 kb on + strand, within HP15_3269 at 3426.224 kb on + strand, within HP15_3269 at 3426.226 kb on + strand, within HP15_3269 at 3426.234 kb on - strand, within HP15_3269 at 3426.305 kb on + strand, within HP15_3269 at 3426.313 kb on - strand, within HP15_3269 at 3426.393 kb on - strand, within HP15_3269 at 3426.490 kb on - strand, within HP15_3269 at 3426.513 kb on - strand, within HP15_3269 at 3426.608 kb on - strand, within HP15_3269 at 3426.633 kb on - strand, within HP15_3269 at 3426.660 kb on - strand, within HP15_3269 at 3426.701 kb on + strand, within HP15_3269 at 3426.755 kb on - strand, within HP15_3269 at 3426.763 kb on - strand, within HP15_3269 at 3426.767 kb on - strand, within HP15_3269 at 3426.767 kb on - strand, within HP15_3269 at 3426.776 kb on + strand, within HP15_3269 at 3426.800 kb on - strand, within HP15_3269 at 3426.975 kb on + strand, within HP15_3269 at 3426.996 kb on + strand, within HP15_3269 at 3427.091 kb on + strand, within HP15_3269 at 3427.178 kb on + strand at 3427.260 kb on + strand at 3427.393 kb on + strand at 3427.401 kb on - strand at 3427.480 kb on - strand at 3427.507 kb on - strand at 3427.521 kb on - strand at 3427.555 kb on + strand at 3427.582 kb on - strand at 3427.648 kb on + strand at 3427.769 kb on - strand at 3427.771 kb on + strand at 3427.874 kb on + strand at 3427.961 kb on + strand at 3427.969 kb on - strand at 3427.971 kb on + strand at 3427.979 kb on - strand at 3427.993 kb on - strand at 3428.177 kb on + strand at 3428.243 kb on - strand at 3428.305 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic remove 3,424,889 + HP15_3268 0.14 +0.7 3,425,076 + HP15_3268 0.31 -0.4 3,425,153 + HP15_3268 0.38 -1.3 3,425,322 + HP15_3268 0.53 -0.3 3,425,330 - HP15_3268 0.54 -0.5 3,425,332 + HP15_3268 0.54 -0.3 3,425,332 + HP15_3268 0.54 -0.3 3,425,350 - HP15_3268 0.55 -0.6 3,425,388 + HP15_3268 0.59 -0.7 3,425,396 - HP15_3268 0.59 +0.2 3,425,398 + HP15_3268 0.60 -0.1 3,425,440 - HP15_3268 0.63 -0.7 3,425,442 + HP15_3268 0.64 -1.8 3,425,442 + HP15_3268 0.64 -0.2 3,425,447 + HP15_3268 0.64 -0.1 3,425,450 - HP15_3268 0.64 -0.3 3,425,482 - HP15_3268 0.67 -0.2 3,425,620 - HP15_3268 0.80 -0.7 3,425,627 - HP15_3268 0.80 -0.9 3,425,630 + HP15_3268 0.81 +0.1 3,425,638 - HP15_3268 0.81 +0.8 3,425,669 - HP15_3268 0.84 +2.2 3,425,707 - HP15_3268 0.87 +0.0 3,425,743 - +0.3 3,425,798 + +0.6 3,425,803 + +0.3 3,425,811 - -0.1 3,425,822 - -1.4 3,425,827 - +0.5 3,425,893 + +1.9 3,425,939 + -0.5 3,425,944 + -0.1 3,425,947 - +0.9 3,425,957 - -0.5 3,426,016 + HP15_3269 0.11 +0.2 3,426,038 + HP15_3269 0.13 -0.3 3,426,069 - HP15_3269 0.15 -0.1 3,426,095 - HP15_3269 0.16 +0.1 3,426,224 + HP15_3269 0.25 +0.1 3,426,224 + HP15_3269 0.25 +0.8 3,426,226 + HP15_3269 0.25 -1.4 3,426,234 - HP15_3269 0.26 -1.3 3,426,305 + HP15_3269 0.31 -1.1 3,426,313 - HP15_3269 0.31 -0.3 3,426,393 - HP15_3269 0.37 -0.2 3,426,490 - HP15_3269 0.43 +0.9 3,426,513 - HP15_3269 0.45 +0.3 3,426,608 - HP15_3269 0.51 +1.0 3,426,633 - HP15_3269 0.53 +1.3 3,426,660 - HP15_3269 0.55 +2.5 3,426,701 + HP15_3269 0.58 -0.1 3,426,755 - HP15_3269 0.61 +0.6 3,426,763 - HP15_3269 0.62 -0.3 3,426,767 - HP15_3269 0.62 +0.3 3,426,767 - HP15_3269 0.62 +0.6 3,426,776 + HP15_3269 0.63 +0.1 3,426,800 - HP15_3269 0.65 +1.6 3,426,975 + HP15_3269 0.76 +0.1 3,426,996 + HP15_3269 0.78 +0.6 3,427,091 + HP15_3269 0.84 +0.9 3,427,178 + -2.3 3,427,260 + +0.2 3,427,393 + -0.6 3,427,401 - +0.6 3,427,480 - -0.6 3,427,507 - -0.7 3,427,521 - +0.5 3,427,555 + -0.2 3,427,582 - +0.9 3,427,648 + +1.9 3,427,769 - +0.1 3,427,771 + -0.0 3,427,874 + +0.8 3,427,961 + -0.3 3,427,969 - -0.3 3,427,971 + -0.7 3,427,979 - -1.0 3,427,993 - -1.4 3,428,177 + -0.4 3,428,243 - +0.4 3,428,305 + +0.9
Or see this region's nucleotide sequence