Experiment: L-Malic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2936 and HP15_2937 overlap by 4 nucleotides HP15_2937 and HP15_2938 overlap by 4 nucleotides HP15_2938 and HP15_2939 are separated by 156 nucleotides
HP15_2936: HP15_2936 - periplasmic sensor signal transduction histidine kinase, at 3,078,059 to 3,079,396
_2936
HP15_2937: HP15_2937 - two component transcriptional regulator, winged helix family, at 3,079,393 to 3,080,064
_2937
HP15_2938: HP15_2938 - propeptide, PepSY amd peptidase M4, at 3,080,061 to 3,080,432
_2938
HP15_2939: HP15_2939 - conserved hypothetical protein, secreted, at 3,080,589 to 3,081,059
_2939
Position (kb)
3079
3080
3081 Strain fitness (log2 ratio)
-1
0
1
2 at 3078.428 kb on - strand, within HP15_2936 at 3078.557 kb on + strand, within HP15_2936 at 3078.873 kb on - strand, within HP15_2936 at 3078.873 kb on - strand, within HP15_2936 at 3079.023 kb on - strand, within HP15_2936 at 3079.045 kb on + strand, within HP15_2936 at 3079.204 kb on + strand, within HP15_2936 at 3079.237 kb on + strand, within HP15_2936 at 3079.268 kb on + strand at 3079.421 kb on + strand at 3079.523 kb on + strand, within HP15_2937 at 3079.578 kb on + strand, within HP15_2937 at 3079.650 kb on - strand, within HP15_2937 at 3079.704 kb on - strand, within HP15_2937 at 3079.814 kb on - strand, within HP15_2937 at 3079.871 kb on + strand, within HP15_2937 at 3080.312 kb on - strand, within HP15_2938 at 3080.442 kb on - strand at 3080.487 kb on + strand at 3080.572 kb on + strand at 3080.673 kb on + strand, within HP15_2939 at 3080.714 kb on + strand, within HP15_2939 at 3080.796 kb on - strand, within HP15_2939 at 3080.832 kb on - strand, within HP15_2939 at 3080.923 kb on + strand, within HP15_2939 at 3080.923 kb on + strand, within HP15_2939 at 3080.971 kb on + strand, within HP15_2939 at 3080.971 kb on + strand, within HP15_2939 at 3080.979 kb on - strand, within HP15_2939 at 3081.037 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic remove 3,078,428 - HP15_2936 0.28 -0.3 3,078,557 + HP15_2936 0.37 -0.2 3,078,873 - HP15_2936 0.61 -1.3 3,078,873 - HP15_2936 0.61 -0.8 3,079,023 - HP15_2936 0.72 -0.2 3,079,045 + HP15_2936 0.74 -0.4 3,079,204 + HP15_2936 0.86 -1.2 3,079,237 + HP15_2936 0.88 -0.4 3,079,268 + -0.2 3,079,421 + +0.8 3,079,523 + HP15_2937 0.19 +0.7 3,079,578 + HP15_2937 0.28 +1.3 3,079,650 - HP15_2937 0.38 -0.4 3,079,704 - HP15_2937 0.46 -0.4 3,079,814 - HP15_2937 0.63 -0.2 3,079,871 + HP15_2937 0.71 +0.5 3,080,312 - HP15_2938 0.67 -1.7 3,080,442 - -1.2 3,080,487 + +0.8 3,080,572 + -0.5 3,080,673 + HP15_2939 0.18 +1.8 3,080,714 + HP15_2939 0.27 +1.4 3,080,796 - HP15_2939 0.44 +0.2 3,080,832 - HP15_2939 0.52 -0.3 3,080,923 + HP15_2939 0.71 -0.0 3,080,923 + HP15_2939 0.71 +0.5 3,080,971 + HP15_2939 0.81 -0.7 3,080,971 + HP15_2939 0.81 +0.5 3,080,979 - HP15_2939 0.83 +0.7 3,081,037 - +0.4
Or see this region's nucleotide sequence