Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c26980

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c26970 and PGA1_c26980 are separated by 88 nucleotidesPGA1_c26980 and PGA1_c26990 are separated by 335 nucleotidesPGA1_c26990 and PGA1_c27000 are separated by 114 nucleotides PGA1_c26970: PGA1_c26970 - mechanosensitive ion channel-like protein, at 2,813,941 to 2,815,404 _c26970 PGA1_c26980: PGA1_c26980 - Rho termination factor, N-terminal domain., at 2,815,493 to 2,815,756 _c26980 PGA1_c26990: PGA1_c26990 - Uncharacterized stress protein (general stress protein 26), at 2,816,092 to 2,816,601 _c26990 PGA1_c27000: PGA1_c27000 - Uncharacterized protein conserved in bacteria, at 2,816,716 to 2,816,913 _c27000 Position (kb) 2815 2816Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2814.542 kb on + strand, within PGA1_c26970at 2814.547 kb on + strand, within PGA1_c26970at 2814.549 kb on + strand, within PGA1_c26970at 2814.549 kb on + strand, within PGA1_c26970at 2814.549 kb on + strand, within PGA1_c26970at 2814.549 kb on + strand, within PGA1_c26970at 2814.549 kb on + strand, within PGA1_c26970at 2814.557 kb on - strand, within PGA1_c26970at 2814.557 kb on - strand, within PGA1_c26970at 2814.557 kb on - strand, within PGA1_c26970at 2814.560 kb on - strand, within PGA1_c26970at 2814.574 kb on + strand, within PGA1_c26970at 2814.592 kb on - strand, within PGA1_c26970at 2814.638 kb on - strand, within PGA1_c26970at 2814.648 kb on - strand, within PGA1_c26970at 2814.648 kb on - strand, within PGA1_c26970at 2814.648 kb on - strand, within PGA1_c26970at 2814.648 kb on - strand, within PGA1_c26970at 2814.648 kb on - strand, within PGA1_c26970at 2814.648 kb on - strand, within PGA1_c26970at 2814.726 kb on - strand, within PGA1_c26970at 2814.831 kb on + strand, within PGA1_c26970at 2814.839 kb on - strand, within PGA1_c26970at 2815.000 kb on - strand, within PGA1_c26970at 2815.081 kb on - strand, within PGA1_c26970at 2815.146 kb on - strand, within PGA1_c26970at 2815.154 kb on + strand, within PGA1_c26970at 2815.241 kb on - strand, within PGA1_c26970at 2815.264 kb on - strandat 2815.300 kb on + strandat 2815.308 kb on - strandat 2815.322 kb on + strandat 2815.399 kb on + strandat 2815.400 kb on + strandat 2815.408 kb on - strandat 2815.415 kb on + strandat 2815.415 kb on + strandat 2815.418 kb on - strandat 2815.420 kb on + strandat 2815.423 kb on - strandat 2815.485 kb on - strandat 2815.555 kb on + strand, within PGA1_c26980at 2815.556 kb on + strand, within PGA1_c26980at 2815.563 kb on - strand, within PGA1_c26980at 2815.591 kb on + strand, within PGA1_c26980at 2815.600 kb on - strand, within PGA1_c26980at 2815.740 kb on - strandat 2815.740 kb on - strandat 2815.755 kb on + strandat 2815.755 kb on + strandat 2815.755 kb on + strandat 2815.760 kb on + strandat 2815.768 kb on - strandat 2815.768 kb on - strandat 2815.768 kb on - strandat 2815.771 kb on + strandat 2815.773 kb on + strandat 2815.773 kb on + strandat 2815.775 kb on + strandat 2815.779 kb on - strandat 2815.779 kb on - strandat 2815.781 kb on - strandat 2815.838 kb on + strandat 2815.846 kb on + strandat 2815.846 kb on - strandat 2815.851 kb on - strandat 2815.922 kb on + strandat 2815.922 kb on + strandat 2815.922 kb on + strandat 2815.922 kb on + strandat 2815.927 kb on + strandat 2815.930 kb on - strandat 2815.935 kb on - strandat 2815.993 kb on - strandat 2816.104 kb on - strandat 2816.104 kb on - strandat 2816.144 kb on + strand, within PGA1_c26990at 2816.145 kb on - strand, within PGA1_c26990at 2816.145 kb on - strand, within PGA1_c26990at 2816.187 kb on - strand, within PGA1_c26990at 2816.187 kb on - strand, within PGA1_c26990at 2816.204 kb on + strand, within PGA1_c26990at 2816.231 kb on + strand, within PGA1_c26990at 2816.239 kb on - strand, within PGA1_c26990at 2816.241 kb on - strand, within PGA1_c26990at 2816.247 kb on + strand, within PGA1_c26990at 2816.248 kb on - strand, within PGA1_c26990at 2816.255 kb on - strand, within PGA1_c26990at 2816.255 kb on - strand, within PGA1_c26990at 2816.283 kb on - strand, within PGA1_c26990at 2816.361 kb on - strand, within PGA1_c26990at 2816.370 kb on - strand, within PGA1_c26990at 2816.388 kb on + strand, within PGA1_c26990at 2816.391 kb on - strand, within PGA1_c26990at 2816.396 kb on - strand, within PGA1_c26990at 2816.456 kb on + strand, within PGA1_c26990at 2816.523 kb on + strand, within PGA1_c26990at 2816.531 kb on - strand, within PGA1_c26990at 2816.531 kb on - strand, within PGA1_c26990at 2816.531 kb on - strand, within PGA1_c26990at 2816.531 kb on - strand, within PGA1_c26990at 2816.555 kb on - strandat 2816.592 kb on + strandat 2816.600 kb on - strandat 2816.611 kb on - strandat 2816.634 kb on + strandat 2816.634 kb on + strandat 2816.642 kb on - strandat 2816.643 kb on - strandat 2816.689 kb on - strandat 2816.713 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
2,814,542 + PGA1_c26970 0.41 -0.8
2,814,547 + PGA1_c26970 0.41 +0.5
2,814,549 + PGA1_c26970 0.42 +0.9
2,814,549 + PGA1_c26970 0.42 -0.6
2,814,549 + PGA1_c26970 0.42 -0.8
2,814,549 + PGA1_c26970 0.42 +0.2
2,814,549 + PGA1_c26970 0.42 -0.2
2,814,557 - PGA1_c26970 0.42 +1.7
2,814,557 - PGA1_c26970 0.42 -0.6
2,814,557 - PGA1_c26970 0.42 -0.6
2,814,560 - PGA1_c26970 0.42 -0.4
2,814,574 + PGA1_c26970 0.43 -2.0
2,814,592 - PGA1_c26970 0.44 +0.0
2,814,638 - PGA1_c26970 0.48 +0.8
2,814,648 - PGA1_c26970 0.48 +0.8
2,814,648 - PGA1_c26970 0.48 -1.5
2,814,648 - PGA1_c26970 0.48 -0.8
2,814,648 - PGA1_c26970 0.48 +1.9
2,814,648 - PGA1_c26970 0.48 -0.2
2,814,648 - PGA1_c26970 0.48 +0.2
2,814,726 - PGA1_c26970 0.54 +0.5
2,814,831 + PGA1_c26970 0.61 -0.8
2,814,839 - PGA1_c26970 0.61 +0.2
2,815,000 - PGA1_c26970 0.72 -0.0
2,815,081 - PGA1_c26970 0.78 -0.8
2,815,146 - PGA1_c26970 0.82 -1.0
2,815,154 + PGA1_c26970 0.83 +1.2
2,815,241 - PGA1_c26970 0.89 -0.0
2,815,264 - +0.9
2,815,300 + -0.4
2,815,308 - -0.3
2,815,322 + -1.2
2,815,399 + -0.1
2,815,400 + +0.5
2,815,408 - -0.2
2,815,415 + -2.3
2,815,415 + -0.3
2,815,418 - -0.6
2,815,420 + +0.0
2,815,423 - -2.3
2,815,485 - -0.8
2,815,555 + PGA1_c26980 0.23 +0.8
2,815,556 + PGA1_c26980 0.24 +1.8
2,815,563 - PGA1_c26980 0.27 +0.3
2,815,591 + PGA1_c26980 0.37 -0.2
2,815,600 - PGA1_c26980 0.41 +0.2
2,815,740 - +0.2
2,815,740 - +1.2
2,815,755 + +0.4
2,815,755 + +0.1
2,815,755 + -0.0
2,815,760 + +1.2
2,815,768 - +0.0
2,815,768 - -1.2
2,815,768 - +1.8
2,815,771 + -0.8
2,815,773 + +0.5
2,815,773 + -0.4
2,815,775 + -0.2
2,815,779 - -2.5
2,815,779 - +0.8
2,815,781 - +0.7
2,815,838 + -0.8
2,815,846 + +1.0
2,815,846 - -0.5
2,815,851 - -2.2
2,815,922 + +1.2
2,815,922 + -0.2
2,815,922 + -0.1
2,815,922 + -0.1
2,815,927 + -0.5
2,815,930 - -2.6
2,815,935 - +0.8
2,815,993 - -0.6
2,816,104 - -1.0
2,816,104 - -0.5
2,816,144 + PGA1_c26990 0.10 +0.0
2,816,145 - PGA1_c26990 0.10 +0.6
2,816,145 - PGA1_c26990 0.10 -0.5
2,816,187 - PGA1_c26990 0.19 +0.8
2,816,187 - PGA1_c26990 0.19 +0.7
2,816,204 + PGA1_c26990 0.22 +0.1
2,816,231 + PGA1_c26990 0.27 -0.4
2,816,239 - PGA1_c26990 0.29 -0.6
2,816,241 - PGA1_c26990 0.29 +0.8
2,816,247 + PGA1_c26990 0.30 +0.3
2,816,248 - PGA1_c26990 0.31 +0.3
2,816,255 - PGA1_c26990 0.32 +0.5
2,816,255 - PGA1_c26990 0.32 -0.8
2,816,283 - PGA1_c26990 0.37 +0.6
2,816,361 - PGA1_c26990 0.53 +1.4
2,816,370 - PGA1_c26990 0.55 +0.4
2,816,388 + PGA1_c26990 0.58 +0.0
2,816,391 - PGA1_c26990 0.59 -0.0
2,816,396 - PGA1_c26990 0.60 +1.3
2,816,456 + PGA1_c26990 0.71 +1.3
2,816,523 + PGA1_c26990 0.85 -0.4
2,816,531 - PGA1_c26990 0.86 +0.6
2,816,531 - PGA1_c26990 0.86 -3.3
2,816,531 - PGA1_c26990 0.86 -1.8
2,816,531 - PGA1_c26990 0.86 +0.2
2,816,555 - -3.1
2,816,592 + +0.5
2,816,600 - -0.4
2,816,611 - -0.4
2,816,634 + -1.4
2,816,634 + +0.6
2,816,642 - +2.2
2,816,643 - +0.8
2,816,689 - -0.2
2,816,713 + +0.1

Or see this region's nucleotide sequence