Experiment: L-Malic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2539 and HP15_2541 are separated by 22 nucleotides HP15_2541 and HP15_2542 are separated by 155 nucleotides HP15_2542 and HP15_2543 are separated by 5 nucleotides HP15_2543 and HP15_2544 are separated by 9 nucleotides
HP15_2539: HP15_2539 - acyl-CoA dehydrogenase domain protein, at 2,684,790 to 2,685,950
_2539
HP15_2541: HP15_2541 - enoyl-CoA hydratase/isomerase family protein, at 2,685,973 to 2,686,794
_2541
HP15_2542: HP15_2542 - methylcrotonoyl-coenzyme A carboxylase 1 (alpha), at 2,686,950 to 2,688,920
_2542
HP15_2543: HP15_2543 - short-chain dehydrogenase/reductase SDR, at 2,688,926 to 2,689,744
_2543
HP15_2544: HP15_2544 - acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 2,689,754 to 2,691,635
_2544
Position (kb)
2686
2687
2688
2689 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2685.967 kb on - strand at 2685.978 kb on - strand at 2686.099 kb on + strand, within HP15_2541 at 2686.164 kb on + strand, within HP15_2541 at 2686.164 kb on + strand, within HP15_2541 at 2686.224 kb on + strand, within HP15_2541 at 2686.251 kb on + strand, within HP15_2541 at 2686.281 kb on + strand, within HP15_2541 at 2686.300 kb on - strand, within HP15_2541 at 2686.327 kb on + strand, within HP15_2541 at 2686.335 kb on - strand, within HP15_2541 at 2686.335 kb on - strand, within HP15_2541 at 2686.491 kb on + strand, within HP15_2541 at 2686.650 kb on - strand, within HP15_2541 at 2686.652 kb on + strand, within HP15_2541 at 2686.683 kb on + strand, within HP15_2541 at 2686.749 kb on - strand at 2686.904 kb on + strand at 2686.912 kb on - strand at 2687.023 kb on - strand at 2687.109 kb on + strand at 2687.135 kb on + strand at 2687.478 kb on - strand, within HP15_2542 at 2687.478 kb on - strand, within HP15_2542 at 2687.497 kb on - strand, within HP15_2542 at 2687.514 kb on + strand, within HP15_2542 at 2687.535 kb on + strand, within HP15_2542 at 2687.630 kb on + strand, within HP15_2542 at 2687.635 kb on + strand, within HP15_2542 at 2687.635 kb on + strand, within HP15_2542 at 2687.635 kb on + strand, within HP15_2542 at 2687.635 kb on + strand, within HP15_2542 at 2687.635 kb on + strand, within HP15_2542 at 2687.635 kb on + strand, within HP15_2542 at 2687.635 kb on + strand, within HP15_2542 at 2687.635 kb on + strand, within HP15_2542 at 2687.635 kb on + strand, within HP15_2542 at 2687.643 kb on - strand, within HP15_2542 at 2687.643 kb on - strand, within HP15_2542 at 2687.643 kb on - strand, within HP15_2542 at 2687.643 kb on - strand, within HP15_2542 at 2687.643 kb on - strand, within HP15_2542 at 2687.643 kb on - strand, within HP15_2542 at 2687.643 kb on - strand, within HP15_2542 at 2687.643 kb on - strand, within HP15_2542 at 2687.648 kb on - strand, within HP15_2542 at 2687.684 kb on - strand, within HP15_2542 at 2687.708 kb on + strand, within HP15_2542 at 2687.744 kb on - strand, within HP15_2542 at 2687.796 kb on + strand, within HP15_2542 at 2687.914 kb on + strand, within HP15_2542 at 2687.937 kb on - strand, within HP15_2542 at 2687.937 kb on - strand, within HP15_2542 at 2687.950 kb on + strand, within HP15_2542 at 2687.963 kb on + strand, within HP15_2542 at 2687.971 kb on - strand, within HP15_2542 at 2687.997 kb on + strand, within HP15_2542 at 2688.005 kb on - strand, within HP15_2542 at 2688.042 kb on + strand, within HP15_2542 at 2688.176 kb on - strand, within HP15_2542 at 2688.181 kb on - strand, within HP15_2542 at 2688.258 kb on + strand, within HP15_2542 at 2688.276 kb on - strand, within HP15_2542 at 2688.551 kb on - strand, within HP15_2542 at 2688.553 kb on + strand, within HP15_2542 at 2688.627 kb on - strand, within HP15_2542 at 2688.740 kb on - strand at 2688.799 kb on + strand at 2688.802 kb on - strand at 2688.905 kb on + strand at 2689.155 kb on + strand, within HP15_2543 at 2689.196 kb on + strand, within HP15_2543 at 2689.204 kb on - strand, within HP15_2543 at 2689.240 kb on + strand, within HP15_2543 at 2689.248 kb on - strand, within HP15_2543 at 2689.289 kb on + strand, within HP15_2543 at 2689.289 kb on + strand, within HP15_2543 at 2689.315 kb on + strand, within HP15_2543 at 2689.315 kb on + strand, within HP15_2543 at 2689.318 kb on - strand, within HP15_2543 at 2689.320 kb on + strand, within HP15_2543 at 2689.323 kb on - strand, within HP15_2543 at 2689.394 kb on - strand, within HP15_2543 at 2689.527 kb on + strand, within HP15_2543 at 2689.535 kb on - strand, within HP15_2543 at 2689.552 kb on - strand, within HP15_2543 at 2689.639 kb on - strand, within HP15_2543 at 2689.811 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic remove 2,685,967 - -0.0 2,685,978 - -2.0 2,686,099 + HP15_2541 0.15 +0.7 2,686,164 + HP15_2541 0.23 +0.8 2,686,164 + HP15_2541 0.23 +0.8 2,686,224 + HP15_2541 0.31 +0.8 2,686,251 + HP15_2541 0.34 -0.1 2,686,281 + HP15_2541 0.37 +1.7 2,686,300 - HP15_2541 0.40 +0.5 2,686,327 + HP15_2541 0.43 -1.1 2,686,335 - HP15_2541 0.44 -0.5 2,686,335 - HP15_2541 0.44 +0.6 2,686,491 + HP15_2541 0.63 -0.2 2,686,650 - HP15_2541 0.82 +0.2 2,686,652 + HP15_2541 0.83 +0.7 2,686,683 + HP15_2541 0.86 -1.5 2,686,749 - -1.4 2,686,904 + +0.8 2,686,912 - -0.6 2,687,023 - -0.5 2,687,109 + -0.3 2,687,135 + +0.9 2,687,478 - HP15_2542 0.27 +0.8 2,687,478 - HP15_2542 0.27 +0.2 2,687,497 - HP15_2542 0.28 -0.6 2,687,514 + HP15_2542 0.29 +0.8 2,687,535 + HP15_2542 0.30 -0.2 2,687,630 + HP15_2542 0.35 +0.7 2,687,635 + HP15_2542 0.35 -0.9 2,687,635 + HP15_2542 0.35 +0.4 2,687,635 + HP15_2542 0.35 -0.0 2,687,635 + HP15_2542 0.35 -0.1 2,687,635 + HP15_2542 0.35 -0.1 2,687,635 + HP15_2542 0.35 +0.6 2,687,635 + HP15_2542 0.35 -0.3 2,687,635 + HP15_2542 0.35 -0.4 2,687,635 + HP15_2542 0.35 +0.4 2,687,643 - HP15_2542 0.35 +1.5 2,687,643 - HP15_2542 0.35 -0.8 2,687,643 - HP15_2542 0.35 +0.3 2,687,643 - HP15_2542 0.35 +0.1 2,687,643 - HP15_2542 0.35 -0.6 2,687,643 - HP15_2542 0.35 +1.2 2,687,643 - HP15_2542 0.35 +0.8 2,687,643 - HP15_2542 0.35 -1.3 2,687,648 - HP15_2542 0.35 +0.8 2,687,684 - HP15_2542 0.37 +0.9 2,687,708 + HP15_2542 0.38 -0.5 2,687,744 - HP15_2542 0.40 +0.5 2,687,796 + HP15_2542 0.43 +2.4 2,687,914 + HP15_2542 0.49 +0.8 2,687,937 - HP15_2542 0.50 -0.3 2,687,937 - HP15_2542 0.50 +1.8 2,687,950 + HP15_2542 0.51 +0.1 2,687,963 + HP15_2542 0.51 -0.6 2,687,971 - HP15_2542 0.52 -0.2 2,687,997 + HP15_2542 0.53 +0.8 2,688,005 - HP15_2542 0.54 +0.1 2,688,042 + HP15_2542 0.55 +0.4 2,688,176 - HP15_2542 0.62 -0.1 2,688,181 - HP15_2542 0.62 +0.8 2,688,258 + HP15_2542 0.66 -1.2 2,688,276 - HP15_2542 0.67 +0.0 2,688,551 - HP15_2542 0.81 +1.2 2,688,553 + HP15_2542 0.81 -0.8 2,688,627 - HP15_2542 0.85 -1.1 2,688,740 - -0.4 2,688,799 + -1.5 2,688,802 - +1.8 2,688,905 + -0.2 2,689,155 + HP15_2543 0.28 -0.3 2,689,196 + HP15_2543 0.33 -1.5 2,689,204 - HP15_2543 0.34 -0.0 2,689,240 + HP15_2543 0.38 -2.4 2,689,248 - HP15_2543 0.39 +0.7 2,689,289 + HP15_2543 0.44 +0.7 2,689,289 + HP15_2543 0.44 -0.6 2,689,315 + HP15_2543 0.47 -0.4 2,689,315 + HP15_2543 0.47 -0.7 2,689,318 - HP15_2543 0.48 -0.5 2,689,320 + HP15_2543 0.48 +0.9 2,689,323 - HP15_2543 0.48 +0.1 2,689,394 - HP15_2543 0.57 -0.7 2,689,527 + HP15_2543 0.73 +1.1 2,689,535 - HP15_2543 0.74 -0.9 2,689,552 - HP15_2543 0.76 +1.1 2,689,639 - HP15_2543 0.87 +0.4 2,689,811 + -0.9
Or see this region's nucleotide sequence