Strain Fitness in Marinobacter adhaerens HP15 around HP15_2425

Experiment: L-Malic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2424 and HP15_2425 are separated by 195 nucleotidesHP15_2425 and HP15_2426 are separated by 227 nucleotides HP15_2424: HP15_2424 - AFG1-family ATPase, at 2,565,292 to 2,566,425 _2424 HP15_2425: HP15_2425 - membrane or secreted protein containing DUF1043, at 2,566,621 to 2,567,061 _2425 HP15_2426: HP15_2426 - NGG1p interacting factor 3, NIF3, at 2,567,289 to 2,568,032 _2426 Position (kb) 2566 2567 2568Strain fitness (log2 ratio) -3 -2 -1 0 1at 2566.288 kb on + strand, within HP15_2424at 2566.392 kb on - strandat 2566.431 kb on - strandat 2566.571 kb on - strandat 2566.684 kb on - strand, within HP15_2425at 2566.903 kb on - strand, within HP15_2425at 2566.988 kb on - strand, within HP15_2425at 2567.101 kb on + strandat 2567.327 kb on + strandat 2567.381 kb on - strand, within HP15_2426at 2567.410 kb on + strand, within HP15_2426at 2567.428 kb on - strand, within HP15_2426at 2567.502 kb on + strand, within HP15_2426at 2567.502 kb on + strand, within HP15_2426at 2567.510 kb on - strand, within HP15_2426at 2567.510 kb on - strand, within HP15_2426at 2567.515 kb on - strand, within HP15_2426at 2567.696 kb on + strand, within HP15_2426

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic
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2,566,288 + HP15_2424 0.88 -3.3
2,566,392 - +0.3
2,566,431 - -0.4
2,566,571 - -0.9
2,566,684 - HP15_2425 0.14 -3.1
2,566,903 - HP15_2425 0.64 -1.9
2,566,988 - HP15_2425 0.83 -0.8
2,567,101 + -0.8
2,567,327 + +0.2
2,567,381 - HP15_2426 0.12 -0.1
2,567,410 + HP15_2426 0.16 +0.3
2,567,428 - HP15_2426 0.19 +0.3
2,567,502 + HP15_2426 0.29 +0.4
2,567,502 + HP15_2426 0.29 +0.8
2,567,510 - HP15_2426 0.30 -0.2
2,567,510 - HP15_2426 0.30 +1.2
2,567,515 - HP15_2426 0.30 -0.6
2,567,696 + HP15_2426 0.55 -0.6

Or see this region's nucleotide sequence