Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24690

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24680 and PGA1_c24690 overlap by 4 nucleotidesPGA1_c24690 and PGA1_c24700 overlap by 8 nucleotidesPGA1_c24700 and PGA1_c24710 are separated by 57 nucleotides PGA1_c24680: PGA1_c24680 - glyoxylate reductase GyaR, at 2,575,126 to 2,576,082 _c24680 PGA1_c24690: PGA1_c24690 - protein CsaA-like protein, at 2,576,079 to 2,576,417 _c24690 PGA1_c24700: PGA1_c24700 - pyrroline-5-carboxylate reductase ProC, at 2,576,410 to 2,577,237 _c24700 PGA1_c24710: PGA1_c24710 - Uncharacterized conserved protein, at 2,577,295 to 2,577,795 _c24710 Position (kb) 2576 2577Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2575.133 kb on + strandat 2575.214 kb on - strandat 2575.225 kb on - strand, within PGA1_c24680at 2575.296 kb on + strand, within PGA1_c24680at 2575.296 kb on - strand, within PGA1_c24680at 2575.323 kb on - strand, within PGA1_c24680at 2575.332 kb on - strand, within PGA1_c24680at 2575.354 kb on + strand, within PGA1_c24680at 2575.426 kb on + strand, within PGA1_c24680at 2575.465 kb on + strand, within PGA1_c24680at 2575.473 kb on + strand, within PGA1_c24680at 2575.481 kb on - strand, within PGA1_c24680at 2575.481 kb on - strand, within PGA1_c24680at 2575.597 kb on + strand, within PGA1_c24680at 2575.650 kb on - strand, within PGA1_c24680at 2575.719 kb on - strand, within PGA1_c24680at 2575.796 kb on - strand, within PGA1_c24680at 2575.847 kb on - strand, within PGA1_c24680at 2575.873 kb on + strand, within PGA1_c24680at 2575.881 kb on - strand, within PGA1_c24680at 2575.890 kb on + strand, within PGA1_c24680at 2576.048 kb on + strandat 2576.102 kb on + strandat 2576.107 kb on + strandat 2576.110 kb on - strandat 2576.110 kb on - strandat 2576.110 kb on - strandat 2576.115 kb on - strand, within PGA1_c24690at 2576.115 kb on - strand, within PGA1_c24690at 2576.115 kb on - strand, within PGA1_c24690at 2576.115 kb on - strand, within PGA1_c24690at 2576.115 kb on - strand, within PGA1_c24690at 2576.147 kb on - strand, within PGA1_c24690at 2576.215 kb on + strand, within PGA1_c24690at 2576.222 kb on + strand, within PGA1_c24690at 2576.223 kb on - strand, within PGA1_c24690at 2576.248 kb on + strand, within PGA1_c24690at 2576.257 kb on + strand, within PGA1_c24690at 2576.257 kb on + strand, within PGA1_c24690at 2576.257 kb on + strand, within PGA1_c24690at 2576.257 kb on + strand, within PGA1_c24690at 2576.257 kb on + strand, within PGA1_c24690at 2576.257 kb on + strand, within PGA1_c24690at 2576.257 kb on + strand, within PGA1_c24690at 2576.265 kb on - strand, within PGA1_c24690at 2576.265 kb on - strand, within PGA1_c24690at 2576.265 kb on - strand, within PGA1_c24690at 2576.275 kb on - strand, within PGA1_c24690at 2576.308 kb on + strand, within PGA1_c24690at 2576.321 kb on - strand, within PGA1_c24690at 2576.326 kb on + strand, within PGA1_c24690at 2576.341 kb on + strand, within PGA1_c24690at 2576.344 kb on - strand, within PGA1_c24690at 2576.344 kb on - strand, within PGA1_c24690at 2576.344 kb on - strand, within PGA1_c24690at 2576.346 kb on + strand, within PGA1_c24690at 2576.349 kb on - strand, within PGA1_c24690at 2576.354 kb on - strand, within PGA1_c24690at 2576.384 kb on - strandat 2576.384 kb on - strandat 2576.401 kb on + strandat 2576.502 kb on + strand, within PGA1_c24700at 2576.517 kb on + strand, within PGA1_c24700at 2576.525 kb on - strand, within PGA1_c24700at 2576.525 kb on - strand, within PGA1_c24700at 2576.526 kb on + strand, within PGA1_c24700at 2576.536 kb on + strand, within PGA1_c24700at 2576.556 kb on + strand, within PGA1_c24700at 2576.561 kb on - strand, within PGA1_c24700at 2576.564 kb on - strand, within PGA1_c24700at 2576.569 kb on - strand, within PGA1_c24700at 2576.652 kb on - strand, within PGA1_c24700at 2576.708 kb on - strand, within PGA1_c24700at 2576.752 kb on - strand, within PGA1_c24700at 2576.767 kb on - strand, within PGA1_c24700at 2576.907 kb on + strand, within PGA1_c24700at 2576.976 kb on - strand, within PGA1_c24700at 2576.988 kb on + strand, within PGA1_c24700at 2577.007 kb on - strand, within PGA1_c24700at 2577.108 kb on + strand, within PGA1_c24700at 2577.158 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,575,133 + +0.4
2,575,214 - -1.0
2,575,225 - PGA1_c24680 0.10 +0.5
2,575,296 + PGA1_c24680 0.18 +0.3
2,575,296 - PGA1_c24680 0.18 -0.0
2,575,323 - PGA1_c24680 0.21 +0.1
2,575,332 - PGA1_c24680 0.22 -0.8
2,575,354 + PGA1_c24680 0.24 -0.7
2,575,426 + PGA1_c24680 0.31 -0.4
2,575,465 + PGA1_c24680 0.35 +0.3
2,575,473 + PGA1_c24680 0.36 +1.2
2,575,481 - PGA1_c24680 0.37 +0.7
2,575,481 - PGA1_c24680 0.37 -1.8
2,575,597 + PGA1_c24680 0.49 -0.3
2,575,650 - PGA1_c24680 0.55 -0.3
2,575,719 - PGA1_c24680 0.62 +1.0
2,575,796 - PGA1_c24680 0.70 +0.0
2,575,847 - PGA1_c24680 0.75 -0.3
2,575,873 + PGA1_c24680 0.78 +0.6
2,575,881 - PGA1_c24680 0.79 +2.2
2,575,890 + PGA1_c24680 0.80 +0.2
2,576,048 + -0.1
2,576,102 + -0.4
2,576,107 + +0.2
2,576,110 - -1.8
2,576,110 - -0.3
2,576,110 - +2.4
2,576,115 - PGA1_c24690 0.11 +0.5
2,576,115 - PGA1_c24690 0.11 -0.1
2,576,115 - PGA1_c24690 0.11 +0.9
2,576,115 - PGA1_c24690 0.11 +0.9
2,576,115 - PGA1_c24690 0.11 +0.8
2,576,147 - PGA1_c24690 0.20 +0.9
2,576,215 + PGA1_c24690 0.40 -0.1
2,576,222 + PGA1_c24690 0.42 -1.9
2,576,223 - PGA1_c24690 0.42 +1.5
2,576,248 + PGA1_c24690 0.50 +1.4
2,576,257 + PGA1_c24690 0.53 +1.1
2,576,257 + PGA1_c24690 0.53 -1.7
2,576,257 + PGA1_c24690 0.53 -0.7
2,576,257 + PGA1_c24690 0.53 -0.1
2,576,257 + PGA1_c24690 0.53 +1.6
2,576,257 + PGA1_c24690 0.53 -1.9
2,576,257 + PGA1_c24690 0.53 -2.2
2,576,265 - PGA1_c24690 0.55 +1.7
2,576,265 - PGA1_c24690 0.55 -1.4
2,576,265 - PGA1_c24690 0.55 +0.0
2,576,275 - PGA1_c24690 0.58 +0.5
2,576,308 + PGA1_c24690 0.68 +1.2
2,576,321 - PGA1_c24690 0.71 -0.5
2,576,326 + PGA1_c24690 0.73 +0.3
2,576,341 + PGA1_c24690 0.77 +0.2
2,576,344 - PGA1_c24690 0.78 -0.3
2,576,344 - PGA1_c24690 0.78 +0.7
2,576,344 - PGA1_c24690 0.78 +1.4
2,576,346 + PGA1_c24690 0.79 +1.9
2,576,349 - PGA1_c24690 0.80 -2.1
2,576,354 - PGA1_c24690 0.81 +0.5
2,576,384 - +0.6
2,576,384 - +0.1
2,576,401 + +0.0
2,576,502 + PGA1_c24700 0.11 +1.0
2,576,517 + PGA1_c24700 0.13 -0.9
2,576,525 - PGA1_c24700 0.14 -0.4
2,576,525 - PGA1_c24700 0.14 -0.4
2,576,526 + PGA1_c24700 0.14 +1.1
2,576,536 + PGA1_c24700 0.15 -0.2
2,576,556 + PGA1_c24700 0.18 +0.5
2,576,561 - PGA1_c24700 0.18 +0.8
2,576,564 - PGA1_c24700 0.19 +1.9
2,576,569 - PGA1_c24700 0.19 +0.3
2,576,652 - PGA1_c24700 0.29 +1.6
2,576,708 - PGA1_c24700 0.36 +0.0
2,576,752 - PGA1_c24700 0.41 +0.3
2,576,767 - PGA1_c24700 0.43 +0.6
2,576,907 + PGA1_c24700 0.60 +3.2
2,576,976 - PGA1_c24700 0.68 -0.8
2,576,988 + PGA1_c24700 0.70 -1.4
2,577,007 - PGA1_c24700 0.72 -0.3
2,577,108 + PGA1_c24700 0.84 +0.4
2,577,158 - +0.8

Or see this region's nucleotide sequence