Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24160 and PGA1_c24170 are separated by 112 nucleotides PGA1_c24170 and PGA1_c24180 are separated by 305 nucleotides PGA1_c24180 and PGA1_c24190 are separated by 142 nucleotides
PGA1_c24160: PGA1_c24160 - hypothetical protein, at 2,520,057 to 2,520,482
_c24160
PGA1_c24170: PGA1_c24170 - 50S ribosomal protein L28, at 2,520,595 to 2,520,885
_c24170
PGA1_c24180: PGA1_c24180 - LAO/AO transport system kinase ArgK, at 2,521,191 to 2,522,213
_c24180
PGA1_c24190: PGA1_c24190 - ATP-dependent RNA helicase HrpB, at 2,522,356 to 2,524,860
_c24190
Position (kb)
2521
2522
2523 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2520.282 kb on - strand, within PGA1_c24160 at 2520.293 kb on - strand, within PGA1_c24160 at 2520.309 kb on - strand, within PGA1_c24160 at 2520.478 kb on - strand at 2520.478 kb on - strand at 2520.481 kb on + strand at 2520.493 kb on + strand at 2520.496 kb on - strand at 2520.546 kb on - strand at 2520.573 kb on - strand at 2520.573 kb on - strand at 2520.573 kb on - strand at 2520.606 kb on - strand at 2520.606 kb on - strand at 2521.019 kb on - strand at 2521.053 kb on - strand at 2521.056 kb on - strand at 2521.074 kb on - strand at 2521.102 kb on - strand at 2521.102 kb on - strand at 2521.102 kb on - strand at 2521.102 kb on - strand at 2521.198 kb on + strand at 2521.201 kb on - strand at 2521.202 kb on - strand at 2521.242 kb on - strand at 2521.261 kb on + strand at 2521.440 kb on - strand, within PGA1_c24180 at 2521.648 kb on + strand, within PGA1_c24180 at 2521.648 kb on + strand, within PGA1_c24180 at 2521.696 kb on + strand, within PGA1_c24180 at 2521.704 kb on - strand, within PGA1_c24180 at 2521.720 kb on + strand, within PGA1_c24180 at 2521.744 kb on - strand, within PGA1_c24180 at 2521.758 kb on - strand, within PGA1_c24180 at 2521.794 kb on + strand, within PGA1_c24180 at 2521.802 kb on - strand, within PGA1_c24180 at 2521.802 kb on - strand, within PGA1_c24180 at 2521.802 kb on - strand, within PGA1_c24180 at 2521.888 kb on + strand, within PGA1_c24180 at 2521.929 kb on + strand, within PGA1_c24180 at 2522.004 kb on - strand, within PGA1_c24180 at 2522.009 kb on - strand, within PGA1_c24180 at 2522.165 kb on - strand at 2522.211 kb on + strand at 2522.331 kb on - strand at 2522.375 kb on + strand at 2522.456 kb on - strand at 2522.604 kb on + strand at 2522.612 kb on - strand, within PGA1_c24190 at 2522.686 kb on + strand, within PGA1_c24190 at 2522.687 kb on + strand, within PGA1_c24190 at 2522.692 kb on + strand, within PGA1_c24190 at 2522.745 kb on - strand, within PGA1_c24190 at 2522.771 kb on + strand, within PGA1_c24190 at 2522.771 kb on + strand, within PGA1_c24190 at 2522.771 kb on + strand, within PGA1_c24190 at 2522.771 kb on + strand, within PGA1_c24190 at 2522.771 kb on + strand, within PGA1_c24190 at 2522.771 kb on + strand, within PGA1_c24190 at 2522.771 kb on + strand, within PGA1_c24190 at 2522.771 kb on + strand, within PGA1_c24190 at 2522.771 kb on + strand, within PGA1_c24190 at 2522.771 kb on + strand, within PGA1_c24190 at 2522.771 kb on + strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.779 kb on - strand, within PGA1_c24190 at 2522.781 kb on + strand, within PGA1_c24190 at 2522.809 kb on - strand, within PGA1_c24190 at 2522.869 kb on + strand, within PGA1_c24190 at 2522.876 kb on + strand, within PGA1_c24190 at 2522.884 kb on - strand, within PGA1_c24190 at 2522.884 kb on - strand, within PGA1_c24190 at 2522.884 kb on - strand, within PGA1_c24190 at 2522.884 kb on - strand, within PGA1_c24190 at 2522.884 kb on - strand, within PGA1_c24190 at 2522.892 kb on - strand, within PGA1_c24190 at 2522.954 kb on + strand, within PGA1_c24190 at 2522.962 kb on - strand, within PGA1_c24190 at 2522.963 kb on + strand, within PGA1_c24190 at 2523.153 kb on + strand, within PGA1_c24190 at 2523.161 kb on - strand, within PGA1_c24190 at 2523.172 kb on + strand, within PGA1_c24190 at 2523.173 kb on - strand, within PGA1_c24190 at 2523.173 kb on - strand, within PGA1_c24190 at 2523.200 kb on + strand, within PGA1_c24190
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,520,282 - PGA1_c24160 0.53 +0.4 2,520,293 - PGA1_c24160 0.55 +0.1 2,520,309 - PGA1_c24160 0.59 +0.4 2,520,478 - +0.9 2,520,478 - -0.5 2,520,481 + +1.7 2,520,493 + -0.6 2,520,496 - -2.1 2,520,546 - +2.7 2,520,573 - -0.1 2,520,573 - +1.1 2,520,573 - +0.1 2,520,606 - +0.2 2,520,606 - +0.6 2,521,019 - +0.4 2,521,053 - +0.9 2,521,056 - +0.2 2,521,074 - -0.4 2,521,102 - +0.2 2,521,102 - +0.9 2,521,102 - +4.7 2,521,102 - -2.3 2,521,198 + +0.5 2,521,201 - +0.9 2,521,202 - +0.3 2,521,242 - -0.8 2,521,261 + -0.1 2,521,440 - PGA1_c24180 0.24 -2.6 2,521,648 + PGA1_c24180 0.45 +2.9 2,521,648 + PGA1_c24180 0.45 +2.0 2,521,696 + PGA1_c24180 0.49 +1.5 2,521,704 - PGA1_c24180 0.50 +1.1 2,521,720 + PGA1_c24180 0.52 +0.1 2,521,744 - PGA1_c24180 0.54 +0.9 2,521,758 - PGA1_c24180 0.55 +0.5 2,521,794 + PGA1_c24180 0.59 +1.1 2,521,802 - PGA1_c24180 0.60 -1.3 2,521,802 - PGA1_c24180 0.60 +1.2 2,521,802 - PGA1_c24180 0.60 -0.2 2,521,888 + PGA1_c24180 0.68 +0.7 2,521,929 + PGA1_c24180 0.72 +1.9 2,522,004 - PGA1_c24180 0.79 +0.8 2,522,009 - PGA1_c24180 0.80 +0.9 2,522,165 - +1.1 2,522,211 + +0.0 2,522,331 - -0.4 2,522,375 + +0.1 2,522,456 - +1.5 2,522,604 + -0.0 2,522,612 - PGA1_c24190 0.10 +0.1 2,522,686 + PGA1_c24190 0.13 +1.5 2,522,687 + PGA1_c24190 0.13 -0.2 2,522,692 + PGA1_c24190 0.13 -1.0 2,522,745 - PGA1_c24190 0.16 +0.3 2,522,771 + PGA1_c24190 0.17 +0.7 2,522,771 + PGA1_c24190 0.17 -2.6 2,522,771 + PGA1_c24190 0.17 +1.2 2,522,771 + PGA1_c24190 0.17 -0.0 2,522,771 + PGA1_c24190 0.17 +0.4 2,522,771 + PGA1_c24190 0.17 -0.5 2,522,771 + PGA1_c24190 0.17 +0.5 2,522,771 + PGA1_c24190 0.17 -0.8 2,522,771 + PGA1_c24190 0.17 -0.1 2,522,771 + PGA1_c24190 0.17 +1.5 2,522,771 + PGA1_c24190 0.17 +1.0 2,522,779 - PGA1_c24190 0.17 +1.7 2,522,779 - PGA1_c24190 0.17 +1.4 2,522,779 - PGA1_c24190 0.17 -2.4 2,522,779 - PGA1_c24190 0.17 +1.8 2,522,779 - PGA1_c24190 0.17 +1.1 2,522,779 - PGA1_c24190 0.17 +1.6 2,522,779 - PGA1_c24190 0.17 -1.9 2,522,779 - PGA1_c24190 0.17 +3.2 2,522,779 - PGA1_c24190 0.17 -0.3 2,522,779 - PGA1_c24190 0.17 -1.4 2,522,779 - PGA1_c24190 0.17 +2.5 2,522,779 - +0.9 2,522,779 - PGA1_c24190 0.17 +1.5 2,522,779 - PGA1_c24190 0.17 +1.1 2,522,779 - PGA1_c24190 0.17 +0.9 2,522,779 - PGA1_c24190 0.17 -0.5 2,522,779 - PGA1_c24190 0.17 -0.1 2,522,779 - PGA1_c24190 0.17 +0.9 2,522,779 - PGA1_c24190 0.17 +0.1 2,522,779 - PGA1_c24190 0.17 -1.4 2,522,779 - PGA1_c24190 0.17 +0.3 2,522,779 - PGA1_c24190 0.17 -1.0 2,522,779 - PGA1_c24190 0.17 -2.6 2,522,781 + PGA1_c24190 0.17 +2.8 2,522,809 - PGA1_c24190 0.18 -1.7 2,522,869 + PGA1_c24190 0.20 +0.1 2,522,876 + PGA1_c24190 0.21 -0.1 2,522,884 - PGA1_c24190 0.21 -1.4 2,522,884 - PGA1_c24190 0.21 +0.5 2,522,884 - PGA1_c24190 0.21 +1.1 2,522,884 - PGA1_c24190 0.21 +0.8 2,522,884 - PGA1_c24190 0.21 +1.9 2,522,892 - PGA1_c24190 0.21 +0.7 2,522,954 + PGA1_c24190 0.24 +0.9 2,522,962 - PGA1_c24190 0.24 -0.8 2,522,963 + PGA1_c24190 0.24 -0.6 2,523,153 + PGA1_c24190 0.32 +0.3 2,523,161 - PGA1_c24190 0.32 -2.6 2,523,172 + PGA1_c24190 0.33 -0.3 2,523,173 - PGA1_c24190 0.33 -1.9 2,523,173 - PGA1_c24190 0.33 +0.3 2,523,200 + PGA1_c24190 0.34 +1.1
Or see this region's nucleotide sequence