Experiment: L-Malic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2238 and HP15_2239 are separated by 110 nucleotides HP15_2239 and HP15_2240 are separated by 121 nucleotides
HP15_2238: HP15_2238 - permease, at 2,359,602 to 2,360,516
_2238
HP15_2239: HP15_2239 - BLUF domain containing protein, at 2,360,627 to 2,361,058
_2239
HP15_2240: HP15_2240 - tRNA-dihydrouridine synthase, TIM-barrel, YjbN, at 2,361,180 to 2,362,214
_2240
Position (kb)
2360
2361
2362 Strain fitness (log2 ratio)
-2
-1
0
1 at 2359.668 kb on - strand at 2359.726 kb on + strand, within HP15_2238 at 2359.780 kb on - strand, within HP15_2238 at 2359.854 kb on + strand, within HP15_2238 at 2359.929 kb on + strand, within HP15_2238 at 2360.018 kb on - strand, within HP15_2238 at 2360.048 kb on + strand, within HP15_2238 at 2360.251 kb on - strand, within HP15_2238 at 2360.313 kb on + strand, within HP15_2238 at 2360.360 kb on - strand, within HP15_2238 at 2360.380 kb on + strand, within HP15_2238 at 2360.407 kb on - strand, within HP15_2238 at 2360.582 kb on + strand at 2360.648 kb on - strand at 2360.766 kb on + strand, within HP15_2239 at 2361.008 kb on + strand, within HP15_2239 at 2361.008 kb on + strand, within HP15_2239 at 2361.009 kb on + strand, within HP15_2239 at 2361.117 kb on - strand at 2361.140 kb on + strand at 2361.314 kb on + strand, within HP15_2240 at 2361.319 kb on + strand, within HP15_2240 at 2361.322 kb on - strand, within HP15_2240 at 2361.322 kb on - strand, within HP15_2240 at 2361.453 kb on - strand, within HP15_2240 at 2361.540 kb on - strand, within HP15_2240 at 2361.563 kb on + strand, within HP15_2240 at 2361.735 kb on + strand, within HP15_2240 at 2361.744 kb on - strand, within HP15_2240 at 2361.886 kb on + strand, within HP15_2240 at 2361.990 kb on + strand, within HP15_2240 at 2362.033 kb on + strand, within HP15_2240
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic remove 2,359,668 - -0.8 2,359,726 + HP15_2238 0.14 -0.9 2,359,780 - HP15_2238 0.19 -0.3 2,359,854 + HP15_2238 0.28 -1.3 2,359,929 + HP15_2238 0.36 +0.1 2,360,018 - HP15_2238 0.45 -1.3 2,360,048 + HP15_2238 0.49 -0.7 2,360,251 - HP15_2238 0.71 -0.3 2,360,313 + HP15_2238 0.78 -0.5 2,360,360 - HP15_2238 0.83 -0.7 2,360,380 + HP15_2238 0.85 -0.3 2,360,407 - HP15_2238 0.88 +0.9 2,360,582 + -0.0 2,360,648 - -0.9 2,360,766 + HP15_2239 0.32 -1.1 2,361,008 + HP15_2239 0.88 +1.1 2,361,008 + HP15_2239 0.88 +0.7 2,361,009 + HP15_2239 0.88 +1.3 2,361,117 - +0.7 2,361,140 + -2.1 2,361,314 + HP15_2240 0.13 +0.3 2,361,319 + HP15_2240 0.13 +0.2 2,361,322 - HP15_2240 0.14 -0.5 2,361,322 - HP15_2240 0.14 -0.1 2,361,453 - HP15_2240 0.26 +0.5 2,361,540 - HP15_2240 0.35 +1.3 2,361,563 + HP15_2240 0.37 +0.6 2,361,735 + HP15_2240 0.54 -1.1 2,361,744 - HP15_2240 0.54 +1.3 2,361,886 + HP15_2240 0.68 -0.4 2,361,990 + HP15_2240 0.78 -0.6 2,362,033 + HP15_2240 0.82 +1.5
Or see this region's nucleotide sequence