Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20910

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c20900 and PGA1_c20910 are separated by 204 nucleotidesPGA1_c20910 and PGA1_c20920 are separated by 272 nucleotidesPGA1_c20920 and PGA1_c20930 are separated by 132 nucleotides PGA1_c20900: PGA1_c20900 - Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family, at 2,167,176 to 2,168,198 _c20900 PGA1_c20910: PGA1_c20910 - PHA synthesis repressor protein PhaR, at 2,168,403 to 2,168,963 _c20910 PGA1_c20920: PGA1_c20920 - granule associated protein (phasin), at 2,169,236 to 2,169,679 _c20920 PGA1_c20930: PGA1_c20930 - poly(3-hydroxyalkanoate) polymerase PhaC, at 2,169,812 to 2,171,641 _c20930 Position (kb) 2168 2169Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2167.421 kb on + strand, within PGA1_c20900at 2167.459 kb on + strand, within PGA1_c20900at 2167.476 kb on + strand, within PGA1_c20900at 2167.494 kb on - strand, within PGA1_c20900at 2167.510 kb on - strand, within PGA1_c20900at 2167.547 kb on + strand, within PGA1_c20900at 2167.596 kb on + strand, within PGA1_c20900at 2167.670 kb on - strand, within PGA1_c20900at 2167.673 kb on - strand, within PGA1_c20900at 2167.700 kb on - strand, within PGA1_c20900at 2167.719 kb on - strand, within PGA1_c20900at 2167.759 kb on + strand, within PGA1_c20900at 2167.767 kb on - strand, within PGA1_c20900at 2167.767 kb on - strand, within PGA1_c20900at 2167.767 kb on - strand, within PGA1_c20900at 2167.767 kb on - strand, within PGA1_c20900at 2167.767 kb on - strand, within PGA1_c20900at 2167.767 kb on - strand, within PGA1_c20900at 2167.845 kb on - strand, within PGA1_c20900at 2167.869 kb on + strand, within PGA1_c20900at 2167.925 kb on - strand, within PGA1_c20900at 2168.027 kb on + strand, within PGA1_c20900at 2168.062 kb on + strand, within PGA1_c20900at 2168.130 kb on - strandat 2168.205 kb on - strandat 2168.213 kb on - strandat 2168.213 kb on - strandat 2168.213 kb on - strandat 2168.264 kb on - strandat 2168.278 kb on - strandat 2168.470 kb on - strand, within PGA1_c20910at 2168.597 kb on + strand, within PGA1_c20910at 2168.608 kb on - strand, within PGA1_c20910at 2168.657 kb on + strand, within PGA1_c20910at 2168.705 kb on + strand, within PGA1_c20910at 2168.705 kb on + strand, within PGA1_c20910at 2168.705 kb on + strand, within PGA1_c20910at 2168.705 kb on + strand, within PGA1_c20910at 2168.705 kb on + strand, within PGA1_c20910at 2168.713 kb on - strand, within PGA1_c20910at 2168.910 kb on - strandat 2168.910 kb on - strandat 2168.910 kb on - strandat 2168.944 kb on + strandat 2168.952 kb on - strandat 2168.952 kb on - strandat 2168.973 kb on + strandat 2168.978 kb on + strandat 2168.986 kb on - strandat 2168.999 kb on + strandat 2168.999 kb on + strandat 2169.007 kb on - strandat 2169.019 kb on + strandat 2169.027 kb on + strandat 2169.027 kb on + strandat 2169.027 kb on + strandat 2169.027 kb on + strandat 2169.035 kb on - strandat 2169.035 kb on - strandat 2169.035 kb on - strandat 2169.081 kb on - strandat 2169.102 kb on - strandat 2169.114 kb on + strandat 2169.122 kb on - strandat 2169.122 kb on - strandat 2169.156 kb on + strandat 2169.156 kb on + strandat 2169.164 kb on + strandat 2169.167 kb on - strandat 2169.167 kb on - strandat 2169.167 kb on - strandat 2169.212 kb on - strandat 2169.325 kb on - strand, within PGA1_c20920at 2169.335 kb on - strand, within PGA1_c20920at 2169.457 kb on - strand, within PGA1_c20920at 2169.541 kb on - strand, within PGA1_c20920at 2169.541 kb on - strand, within PGA1_c20920at 2169.545 kb on + strand, within PGA1_c20920at 2169.553 kb on - strand, within PGA1_c20920at 2169.698 kb on - strandat 2169.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,167,421 + PGA1_c20900 0.24 +1.9
2,167,459 + PGA1_c20900 0.28 -0.3
2,167,476 + PGA1_c20900 0.29 -0.1
2,167,494 - PGA1_c20900 0.31 -1.7
2,167,510 - PGA1_c20900 0.33 -1.5
2,167,547 + PGA1_c20900 0.36 +1.3
2,167,596 + PGA1_c20900 0.41 -0.5
2,167,670 - PGA1_c20900 0.48 -0.6
2,167,673 - PGA1_c20900 0.49 +1.9
2,167,700 - PGA1_c20900 0.51 -0.6
2,167,719 - PGA1_c20900 0.53 +0.4
2,167,759 + PGA1_c20900 0.57 -2.1
2,167,767 - PGA1_c20900 0.58 -0.3
2,167,767 - PGA1_c20900 0.58 +0.2
2,167,767 - PGA1_c20900 0.58 +1.2
2,167,767 - PGA1_c20900 0.58 +1.2
2,167,767 - PGA1_c20900 0.58 +0.3
2,167,767 - PGA1_c20900 0.58 +0.2
2,167,845 - PGA1_c20900 0.65 -0.1
2,167,869 + PGA1_c20900 0.68 -1.1
2,167,925 - PGA1_c20900 0.73 -0.5
2,168,027 + PGA1_c20900 0.83 -0.7
2,168,062 + PGA1_c20900 0.87 -0.1
2,168,130 - -1.8
2,168,205 - -1.1
2,168,213 - +0.3
2,168,213 - +0.4
2,168,213 - -1.7
2,168,264 - +0.2
2,168,278 - +0.1
2,168,470 - PGA1_c20910 0.12 +0.6
2,168,597 + PGA1_c20910 0.35 +0.1
2,168,608 - PGA1_c20910 0.37 +1.3
2,168,657 + PGA1_c20910 0.45 +2.5
2,168,705 + PGA1_c20910 0.54 +0.2
2,168,705 + PGA1_c20910 0.54 +0.2
2,168,705 + PGA1_c20910 0.54 -0.1
2,168,705 + PGA1_c20910 0.54 +0.5
2,168,705 + PGA1_c20910 0.54 +0.3
2,168,713 - PGA1_c20910 0.55 +1.0
2,168,910 - +2.5
2,168,910 - +0.1
2,168,910 - +1.7
2,168,944 + +1.2
2,168,952 - -0.2
2,168,952 - +1.0
2,168,973 + +1.3
2,168,978 + -1.6
2,168,986 - -0.1
2,168,999 + +0.9
2,168,999 + -0.9
2,169,007 - +0.3
2,169,019 + -2.3
2,169,027 + +0.3
2,169,027 + -1.1
2,169,027 + +4.2
2,169,027 + -0.3
2,169,035 - -1.5
2,169,035 - +1.2
2,169,035 - -0.1
2,169,081 - -2.7
2,169,102 - -0.5
2,169,114 + -0.5
2,169,122 - +1.5
2,169,122 - -0.1
2,169,156 + +0.9
2,169,156 + +1.6
2,169,164 + -2.5
2,169,167 - -2.3
2,169,167 - +0.5
2,169,167 - -0.7
2,169,212 - -0.0
2,169,325 - PGA1_c20920 0.20 -0.4
2,169,335 - PGA1_c20920 0.22 +0.2
2,169,457 - PGA1_c20920 0.50 +0.3
2,169,541 - PGA1_c20920 0.69 +0.4
2,169,541 - PGA1_c20920 0.69 -0.9
2,169,545 + PGA1_c20920 0.70 -0.1
2,169,553 - PGA1_c20920 0.71 +1.3
2,169,698 - -0.1
2,169,962 - -0.1

Or see this region's nucleotide sequence