Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00020

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00010 and PGA1_c00020 are separated by 309 nucleotidesPGA1_c00020 and PGA1_c00030 are separated by 97 nucleotides PGA1_c00010: PGA1_c00010 - chromosomal replication initiator protein DnaA, at 101 to 1,528 _c00010 PGA1_c00020: PGA1_c00020 - DNA polymerase III subunit beta, at 1,838 to 2,959 _c00020 PGA1_c00030: PGA1_c00030 - DNA replication and repair protein RecF, at 3,057 to 4,154 _c00030 Position (kb) 1 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1at 1.512 kb on + strandat 1.515 kb on + strandat 1.626 kb on - strandat 1.679 kb on - strandat 1.744 kb on + strandat 1.750 kb on + strandat 2.953 kb on + strandat 2.953 kb on + strandat 2.953 kb on + strandat 2.961 kb on - strandat 2.963 kb on + strandat 2.969 kb on + strandat 2.990 kb on + strandat 2.990 kb on + strandat 2.998 kb on - strandat 2.998 kb on - strandat 3.053 kb on + strandat 3.070 kb on - strandat 3.073 kb on + strandat 3.073 kb on + strandat 3.093 kb on + strandat 3.131 kb on + strandat 3.248 kb on + strand, within PGA1_c00030at 3.281 kb on + strand, within PGA1_c00030at 3.289 kb on + strand, within PGA1_c00030at 3.317 kb on - strand, within PGA1_c00030at 3.342 kb on - strand, within PGA1_c00030at 3.386 kb on - strand, within PGA1_c00030at 3.510 kb on + strand, within PGA1_c00030at 3.584 kb on - strand, within PGA1_c00030at 3.640 kb on + strand, within PGA1_c00030at 3.674 kb on - strand, within PGA1_c00030at 3.707 kb on - strand, within PGA1_c00030at 3.732 kb on + strand, within PGA1_c00030at 3.750 kb on - strand, within PGA1_c00030at 3.763 kb on + strand, within PGA1_c00030at 3.799 kb on + strand, within PGA1_c00030at 3.807 kb on - strand, within PGA1_c00030at 3.807 kb on - strand, within PGA1_c00030at 3.831 kb on - strand, within PGA1_c00030at 3.848 kb on + strand, within PGA1_c00030at 3.848 kb on + strand, within PGA1_c00030at 3.897 kb on + strand, within PGA1_c00030

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,512 + +0.7
1,515 + -0.9
1,626 - -1.3
1,679 - +0.6
1,744 + -0.5
1,750 + +0.4
2,953 + +0.3
2,953 + +0.5
2,953 + +1.1
2,961 - -0.8
2,963 + +0.3
2,969 + -0.7
2,990 + +0.4
2,990 + -1.5
2,998 - -2.3
2,998 - -3.4
3,053 + -0.0
3,070 - -1.5
3,073 + -1.2
3,073 + -2.2
3,093 + -3.7
3,131 + -2.3
3,248 + PGA1_c00030 0.17 -2.9
3,281 + PGA1_c00030 0.20 -1.7
3,289 + PGA1_c00030 0.21 -2.3
3,317 - PGA1_c00030 0.24 -2.9
3,342 - PGA1_c00030 0.26 -0.2
3,386 - PGA1_c00030 0.30 -1.3
3,510 + PGA1_c00030 0.41 -1.7
3,584 - PGA1_c00030 0.48 -1.5
3,640 + PGA1_c00030 0.53 -1.3
3,674 - PGA1_c00030 0.56 -2.0
3,707 - PGA1_c00030 0.59 -2.3
3,732 + PGA1_c00030 0.61 -3.2
3,750 - PGA1_c00030 0.63 -1.9
3,763 + PGA1_c00030 0.64 -2.9
3,799 + PGA1_c00030 0.68 -1.5
3,807 - PGA1_c00030 0.68 -1.7
3,807 - PGA1_c00030 0.68 -1.2
3,831 - PGA1_c00030 0.70 -1.0
3,848 + PGA1_c00030 0.72 -1.5
3,848 + PGA1_c00030 0.72 -1.9
3,897 + PGA1_c00030 0.77 -0.2

Or see this region's nucleotide sequence