Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c19800

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c19780 and PGA1_c19790 are separated by 33 nucleotidesPGA1_c19790 and PGA1_c19800 are separated by 20 nucleotidesPGA1_c19800 and PGA1_c19810 are separated by 226 nucleotides PGA1_c19780: PGA1_c19780 - clan AA aspartic protease, TIGR02281 family, at 2,052,267 to 2,052,848 _c19780 PGA1_c19790: PGA1_c19790 - putative DNA polymerase III chi subunit, holC, at 2,052,882 to 2,053,346 _c19790 PGA1_c19800: PGA1_c19800 - cytosol aminopeptidase PepA, at 2,053,367 to 2,054,842 _c19800 PGA1_c19810: PGA1_c19810 - Predicted permeases, at 2,055,069 to 2,056,220 _c19810 Position (kb) 2053 2054 2055Strain fitness (log2 ratio) -2 -1 0 1 2at 2052.367 kb on - strand, within PGA1_c19780at 2052.367 kb on - strand, within PGA1_c19780at 2052.418 kb on + strand, within PGA1_c19780at 2052.583 kb on + strand, within PGA1_c19780at 2052.588 kb on + strand, within PGA1_c19780at 2052.618 kb on + strand, within PGA1_c19780at 2052.620 kb on + strand, within PGA1_c19780at 2052.674 kb on + strand, within PGA1_c19780at 2052.703 kb on + strand, within PGA1_c19780at 2052.769 kb on + strand, within PGA1_c19780at 2052.833 kb on + strandat 2052.852 kb on - strandat 2052.880 kb on - strandat 2052.956 kb on - strand, within PGA1_c19790at 2053.079 kb on + strand, within PGA1_c19790at 2053.127 kb on + strand, within PGA1_c19790at 2053.135 kb on - strand, within PGA1_c19790at 2053.139 kb on - strand, within PGA1_c19790at 2053.232 kb on + strand, within PGA1_c19790at 2053.232 kb on + strand, within PGA1_c19790at 2053.240 kb on - strand, within PGA1_c19790at 2053.309 kb on - strandat 2053.340 kb on + strandat 2053.340 kb on + strandat 2053.342 kb on + strandat 2053.348 kb on - strandat 2053.348 kb on - strandat 2053.362 kb on - strandat 2053.372 kb on - strandat 2053.383 kb on - strandat 2053.383 kb on - strandat 2053.393 kb on - strandat 2053.645 kb on - strand, within PGA1_c19800at 2053.844 kb on - strand, within PGA1_c19800at 2053.846 kb on + strand, within PGA1_c19800at 2053.854 kb on - strand, within PGA1_c19800at 2053.854 kb on - strand, within PGA1_c19800at 2053.860 kb on + strand, within PGA1_c19800at 2053.947 kb on + strand, within PGA1_c19800at 2053.955 kb on - strand, within PGA1_c19800at 2053.963 kb on + strand, within PGA1_c19800at 2053.971 kb on - strand, within PGA1_c19800at 2054.139 kb on + strand, within PGA1_c19800at 2054.153 kb on + strand, within PGA1_c19800at 2054.197 kb on + strand, within PGA1_c19800at 2054.221 kb on - strand, within PGA1_c19800at 2054.228 kb on + strand, within PGA1_c19800at 2054.229 kb on - strand, within PGA1_c19800at 2054.241 kb on - strand, within PGA1_c19800at 2054.316 kb on - strand, within PGA1_c19800at 2054.479 kb on - strand, within PGA1_c19800at 2054.703 kb on + strandat 2054.716 kb on + strandat 2054.778 kb on - strandat 2054.858 kb on - strandat 2054.858 kb on - strandat 2054.864 kb on - strandat 2054.937 kb on + strandat 2054.945 kb on - strandat 2054.970 kb on + strandat 2054.978 kb on + strandat 2054.992 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,052,367 - PGA1_c19780 0.17 -1.5
2,052,367 - PGA1_c19780 0.17 +0.3
2,052,418 + PGA1_c19780 0.26 -1.5
2,052,583 + PGA1_c19780 0.54 -0.9
2,052,588 + PGA1_c19780 0.55 +0.0
2,052,618 + PGA1_c19780 0.60 -1.5
2,052,620 + PGA1_c19780 0.61 +1.0
2,052,674 + PGA1_c19780 0.70 +1.0
2,052,703 + PGA1_c19780 0.75 -1.3
2,052,769 + PGA1_c19780 0.86 +0.3
2,052,833 + -2.0
2,052,852 - +1.5
2,052,880 - +1.4
2,052,956 - PGA1_c19790 0.16 +0.1
2,053,079 + PGA1_c19790 0.42 -2.6
2,053,127 + PGA1_c19790 0.53 +1.1
2,053,135 - PGA1_c19790 0.54 +0.8
2,053,139 - PGA1_c19790 0.55 +0.5
2,053,232 + PGA1_c19790 0.75 +0.3
2,053,232 + PGA1_c19790 0.75 +1.8
2,053,240 - PGA1_c19790 0.77 +0.1
2,053,309 - +0.1
2,053,340 + +0.1
2,053,340 + -0.0
2,053,342 + +0.6
2,053,348 - -0.6
2,053,348 - +0.8
2,053,362 - +0.3
2,053,372 - +1.1
2,053,383 - -1.7
2,053,383 - +0.3
2,053,393 - +1.6
2,053,645 - PGA1_c19800 0.19 +1.3
2,053,844 - PGA1_c19800 0.32 -1.2
2,053,846 + PGA1_c19800 0.32 +1.1
2,053,854 - PGA1_c19800 0.33 -0.0
2,053,854 - PGA1_c19800 0.33 +0.3
2,053,860 + PGA1_c19800 0.33 +0.0
2,053,947 + PGA1_c19800 0.39 +0.6
2,053,955 - PGA1_c19800 0.40 -1.3
2,053,963 + PGA1_c19800 0.40 +1.3
2,053,971 - PGA1_c19800 0.41 +0.1
2,054,139 + PGA1_c19800 0.52 -1.0
2,054,153 + PGA1_c19800 0.53 +0.7
2,054,197 + PGA1_c19800 0.56 +1.3
2,054,221 - PGA1_c19800 0.58 -0.9
2,054,228 + PGA1_c19800 0.58 +0.4
2,054,229 - PGA1_c19800 0.58 +0.7
2,054,241 - PGA1_c19800 0.59 +1.8
2,054,316 - PGA1_c19800 0.64 +1.6
2,054,479 - PGA1_c19800 0.75 -0.7
2,054,703 + +1.8
2,054,716 + +0.7
2,054,778 - -0.2
2,054,858 - -0.3
2,054,858 - -0.3
2,054,864 - -0.7
2,054,937 + +0.7
2,054,945 - +0.1
2,054,970 + +0.0
2,054,978 + +0.2
2,054,992 - -0.3

Or see this region's nucleotide sequence