Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01950 and PGA1_c01960 are separated by 14 nucleotides PGA1_c01960 and PGA1_c01970 are separated by 4 nucleotides PGA1_c01970 and PGA1_c01980 are separated by 229 nucleotides
PGA1_c01950: PGA1_c01950 - ribosomal large subunit pseudouridine synthase C, at 177,932 to 178,963
_c01950
PGA1_c01960: PGA1_c01960 - putative hydrolase, at 178,978 to 179,646
_c01960
PGA1_c01970: PGA1_c01970 - Chaperone required for the assembly of the mitochondrial F1-ATPase, at 179,651 to 180,358
_c01970
PGA1_c01980: PGA1_c01980 - glutamate/glutamine/aspartate/asparagine-binding protein BztA, at 180,588 to 181,604
_c01980
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1 at 178.917 kb on + strand at 179.127 kb on + strand, within PGA1_c01960 at 179.127 kb on + strand, within PGA1_c01960 at 179.127 kb on + strand, within PGA1_c01960 at 179.135 kb on - strand, within PGA1_c01960 at 179.207 kb on - strand, within PGA1_c01960 at 179.236 kb on + strand, within PGA1_c01960 at 179.294 kb on - strand, within PGA1_c01960 at 179.355 kb on + strand, within PGA1_c01960 at 179.631 kb on + strand at 179.653 kb on - strand at 180.345 kb on - strand at 180.422 kb on + strand at 180.430 kb on - strand at 180.459 kb on - strand at 180.476 kb on + strand at 180.528 kb on - strand at 180.531 kb on + strand at 180.536 kb on + strand at 180.571 kb on + strand at 180.617 kb on + strand at 180.617 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 178,917 + -2.2 179,127 + PGA1_c01960 0.22 +1.5 179,127 + PGA1_c01960 0.22 +1.1 179,127 + PGA1_c01960 0.22 +0.1 179,135 - PGA1_c01960 0.23 +1.6 179,207 - PGA1_c01960 0.34 +0.7 179,236 + PGA1_c01960 0.39 -1.1 179,294 - PGA1_c01960 0.47 -2.2 179,355 + PGA1_c01960 0.56 -0.2 179,631 + +1.3 179,653 - +0.6 180,345 - -0.2 180,422 + -0.2 180,430 - +0.4 180,459 - +0.3 180,476 + +1.1 180,528 - -0.7 180,531 + +0.1 180,536 + -0.2 180,571 + -0.7 180,617 + -2.2 180,617 + -0.7
Or see this region's nucleotide sequence