Experiment: L-Malic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1705 and HP15_1706 are separated by 3 nucleotides HP15_1706 and HP15_1707 are separated by 30 nucleotides HP15_1707 and HP15_1708 are separated by 27 nucleotides
HP15_1705: HP15_1705 - potassium uptake protein, TrkH family, at 1,798,365 to 1,799,882
_1705
HP15_1706: HP15_1706 - alpha-glucan phosphorylase, at 1,799,886 to 1,802,420
_1706
HP15_1707: HP15_1707 - short-chain dehydrogenase/reductase SDR, at 1,802,451 to 1,803,221
_1707
HP15_1708: HP15_1708 - type IV pilus assembly PilZ, at 1,803,249 to 1,803,545
_1708
Position (kb)
1799
1800
1801
1802
1803 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1799.908 kb on - strand at 1799.925 kb on + strand at 1800.016 kb on + strand at 1800.127 kb on - strand at 1800.144 kb on + strand, within HP15_1706 at 1800.283 kb on + strand, within HP15_1706 at 1800.296 kb on - strand, within HP15_1706 at 1800.347 kb on - strand, within HP15_1706 at 1800.492 kb on - strand, within HP15_1706 at 1800.572 kb on - strand, within HP15_1706 at 1800.572 kb on - strand, within HP15_1706 at 1800.587 kb on - strand, within HP15_1706 at 1800.636 kb on - strand, within HP15_1706 at 1800.659 kb on + strand, within HP15_1706 at 1800.669 kb on - strand, within HP15_1706 at 1800.718 kb on + strand, within HP15_1706 at 1800.726 kb on - strand, within HP15_1706 at 1800.906 kb on + strand, within HP15_1706 at 1801.031 kb on + strand, within HP15_1706 at 1801.098 kb on + strand, within HP15_1706 at 1801.106 kb on - strand, within HP15_1706 at 1801.106 kb on - strand, within HP15_1706 at 1801.223 kb on - strand, within HP15_1706 at 1801.288 kb on + strand, within HP15_1706 at 1801.311 kb on - strand, within HP15_1706 at 1801.324 kb on + strand, within HP15_1706 at 1801.415 kb on + strand, within HP15_1706 at 1801.521 kb on + strand, within HP15_1706 at 1801.563 kb on + strand, within HP15_1706 at 1801.591 kb on + strand, within HP15_1706 at 1801.594 kb on + strand, within HP15_1706 at 1801.731 kb on - strand, within HP15_1706 at 1801.837 kb on + strand, within HP15_1706 at 1802.001 kb on + strand, within HP15_1706 at 1802.061 kb on - strand, within HP15_1706 at 1802.081 kb on + strand, within HP15_1706 at 1802.118 kb on - strand, within HP15_1706 at 1802.199 kb on - strand at 1802.199 kb on - strand at 1802.269 kb on - strand at 1802.407 kb on - strand at 1802.415 kb on + strand at 1802.440 kb on - strand at 1802.461 kb on + strand at 1802.491 kb on - strand at 1802.698 kb on + strand, within HP15_1707 at 1803.213 kb on - strand at 1803.227 kb on + strand at 1803.235 kb on + strand at 1803.243 kb on - strand at 1803.397 kb on + strand, within HP15_1708 at 1803.399 kb on - strand, within HP15_1708
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic remove 1,799,908 - +0.1 1,799,925 + -0.5 1,800,016 + -1.3 1,800,127 - -0.9 1,800,144 + HP15_1706 0.10 -0.9 1,800,283 + HP15_1706 0.16 -0.9 1,800,296 - HP15_1706 0.16 +1.2 1,800,347 - HP15_1706 0.18 -1.6 1,800,492 - HP15_1706 0.24 +1.7 1,800,572 - HP15_1706 0.27 +0.2 1,800,572 - HP15_1706 0.27 -0.9 1,800,587 - HP15_1706 0.28 -0.4 1,800,636 - HP15_1706 0.30 +1.3 1,800,659 + HP15_1706 0.30 +0.7 1,800,669 - HP15_1706 0.31 +1.3 1,800,718 + HP15_1706 0.33 -0.5 1,800,726 - HP15_1706 0.33 -0.8 1,800,906 + HP15_1706 0.40 -0.5 1,801,031 + HP15_1706 0.45 -1.5 1,801,098 + HP15_1706 0.48 +0.9 1,801,106 - HP15_1706 0.48 -0.3 1,801,106 - HP15_1706 0.48 +0.8 1,801,223 - HP15_1706 0.53 -0.6 1,801,288 + HP15_1706 0.55 +0.1 1,801,311 - HP15_1706 0.56 +0.7 1,801,324 + HP15_1706 0.57 +0.7 1,801,415 + HP15_1706 0.60 +0.3 1,801,521 + HP15_1706 0.64 -0.3 1,801,563 + HP15_1706 0.66 -0.4 1,801,591 + HP15_1706 0.67 -1.0 1,801,594 + HP15_1706 0.67 -1.2 1,801,731 - HP15_1706 0.73 +0.4 1,801,837 + HP15_1706 0.77 +0.0 1,802,001 + HP15_1706 0.83 -1.1 1,802,061 - HP15_1706 0.86 -1.8 1,802,081 + HP15_1706 0.87 +2.1 1,802,118 - HP15_1706 0.88 +0.8 1,802,199 - -0.6 1,802,199 - +0.1 1,802,269 - +0.1 1,802,407 - -0.7 1,802,415 + -1.1 1,802,440 - -0.3 1,802,461 + +0.1 1,802,491 - +0.5 1,802,698 + HP15_1707 0.32 +0.5 1,803,213 - -0.5 1,803,227 + +0.7 1,803,235 + -0.3 1,803,243 - -0.3 1,803,397 + HP15_1708 0.50 +1.2 1,803,399 - HP15_1708 0.51 -0.6
Or see this region's nucleotide sequence