Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17410

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c17390 and PGA1_c17400 are separated by 191 nucleotidesPGA1_c17400 and PGA1_c17410 are separated by 137 nucleotidesPGA1_c17410 and PGA1_c17420 are separated by 247 nucleotides PGA1_c17390: PGA1_c17390 - dihydrolipoyl dehydrogenase LpdA, at 1,819,088 to 1,820,482 _c17390 PGA1_c17400: PGA1_c17400 - Uncharacterized protein conserved in bacteria, at 1,820,674 to 1,821,252 _c17400 PGA1_c17410: PGA1_c17410 - MFS type transporter, at 1,821,390 to 1,822,664 _c17410 PGA1_c17420: PGA1_c17420 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA, at 1,822,912 to 1,823,982 _c17420 Position (kb) 1821 1822 1823Strain fitness (log2 ratio) -2 -1 0 1 2at 1820.624 kb on + strandat 1820.671 kb on + strandat 1820.742 kb on + strand, within PGA1_c17400at 1820.845 kb on + strand, within PGA1_c17400at 1821.074 kb on - strand, within PGA1_c17400at 1821.074 kb on - strand, within PGA1_c17400at 1821.076 kb on + strand, within PGA1_c17400at 1821.076 kb on + strand, within PGA1_c17400at 1821.084 kb on - strand, within PGA1_c17400at 1821.194 kb on - strand, within PGA1_c17400at 1821.207 kb on - strandat 1821.207 kb on - strandat 1821.207 kb on - strandat 1821.237 kb on + strandat 1821.237 kb on + strandat 1821.245 kb on - strandat 1821.247 kb on + strandat 1821.247 kb on + strandat 1821.262 kb on - strandat 1821.274 kb on - strandat 1821.274 kb on - strandat 1821.311 kb on - strandat 1821.456 kb on + strandat 1821.470 kb on - strandat 1821.476 kb on - strandat 1821.490 kb on + strandat 1821.531 kb on - strand, within PGA1_c17410at 1821.677 kb on + strand, within PGA1_c17410at 1821.737 kb on - strand, within PGA1_c17410at 1821.765 kb on - strand, within PGA1_c17410at 1821.765 kb on - strand, within PGA1_c17410at 1821.766 kb on - strand, within PGA1_c17410at 1821.775 kb on + strand, within PGA1_c17410at 1821.849 kb on - strand, within PGA1_c17410at 1821.854 kb on - strand, within PGA1_c17410at 1821.854 kb on - strand, within PGA1_c17410at 1821.854 kb on - strand, within PGA1_c17410at 1821.934 kb on + strand, within PGA1_c17410at 1822.023 kb on + strand, within PGA1_c17410at 1822.046 kb on + strand, within PGA1_c17410at 1822.051 kb on + strand, within PGA1_c17410at 1822.056 kb on + strand, within PGA1_c17410at 1822.056 kb on + strand, within PGA1_c17410at 1822.056 kb on + strand, within PGA1_c17410at 1822.064 kb on - strand, within PGA1_c17410at 1822.064 kb on - strand, within PGA1_c17410at 1822.104 kb on - strand, within PGA1_c17410at 1822.109 kb on - strand, within PGA1_c17410at 1822.114 kb on - strand, within PGA1_c17410at 1822.223 kb on + strand, within PGA1_c17410at 1822.245 kb on + strand, within PGA1_c17410at 1822.255 kb on + strand, within PGA1_c17410at 1822.255 kb on + strand, within PGA1_c17410at 1822.255 kb on + strand, within PGA1_c17410at 1822.255 kb on + strand, within PGA1_c17410at 1822.263 kb on - strand, within PGA1_c17410at 1822.326 kb on + strand, within PGA1_c17410at 1822.380 kb on - strand, within PGA1_c17410at 1822.397 kb on - strand, within PGA1_c17410at 1822.431 kb on + strand, within PGA1_c17410at 1822.486 kb on + strand, within PGA1_c17410at 1822.554 kb on + strandat 1822.562 kb on - strandat 1822.590 kb on + strandat 1822.632 kb on - strandat 1822.707 kb on + strandat 1822.713 kb on + strandat 1822.725 kb on + strandat 1822.733 kb on - strandat 1822.733 kb on - strandat 1822.837 kb on - strandat 1822.867 kb on + strandat 1822.873 kb on - strandat 1822.875 kb on - strandat 1822.894 kb on - strandat 1822.927 kb on - strandat 1823.149 kb on + strand, within PGA1_c17420at 1823.375 kb on + strand, within PGA1_c17420at 1823.375 kb on + strand, within PGA1_c17420at 1823.383 kb on - strand, within PGA1_c17420at 1823.383 kb on - strand, within PGA1_c17420at 1823.383 kb on - strand, within PGA1_c17420at 1823.593 kb on + strand, within PGA1_c17420at 1823.593 kb on + strand, within PGA1_c17420

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,820,624 + +0.0
1,820,671 + +0.2
1,820,742 + PGA1_c17400 0.12 -0.1
1,820,845 + PGA1_c17400 0.30 -2.2
1,821,074 - PGA1_c17400 0.69 +0.6
1,821,074 - PGA1_c17400 0.69 -0.2
1,821,076 + PGA1_c17400 0.69 +1.8
1,821,076 + PGA1_c17400 0.69 +0.0
1,821,084 - PGA1_c17400 0.71 -0.5
1,821,194 - PGA1_c17400 0.90 -0.7
1,821,207 - +0.9
1,821,207 - +0.5
1,821,207 - -0.1
1,821,237 + -0.7
1,821,237 + +0.6
1,821,245 - +0.5
1,821,247 + +0.9
1,821,247 + +0.6
1,821,262 - +0.3
1,821,274 - +0.6
1,821,274 - +0.9
1,821,311 - -0.8
1,821,456 + +0.7
1,821,470 - -0.0
1,821,476 - +1.5
1,821,490 + -1.9
1,821,531 - PGA1_c17410 0.11 -1.1
1,821,677 + PGA1_c17410 0.23 -1.3
1,821,737 - PGA1_c17410 0.27 +0.1
1,821,765 - PGA1_c17410 0.29 +0.1
1,821,765 - PGA1_c17410 0.29 +1.6
1,821,766 - PGA1_c17410 0.29 +0.5
1,821,775 + PGA1_c17410 0.30 +2.2
1,821,849 - PGA1_c17410 0.36 -0.2
1,821,854 - PGA1_c17410 0.36 +1.3
1,821,854 - PGA1_c17410 0.36 +1.7
1,821,854 - PGA1_c17410 0.36 -1.8
1,821,934 + PGA1_c17410 0.43 +1.1
1,822,023 + PGA1_c17410 0.50 +1.0
1,822,046 + PGA1_c17410 0.51 +1.7
1,822,051 + PGA1_c17410 0.52 +0.7
1,822,056 + PGA1_c17410 0.52 -0.7
1,822,056 + PGA1_c17410 0.52 +0.5
1,822,056 + PGA1_c17410 0.52 +1.2
1,822,064 - PGA1_c17410 0.53 +0.5
1,822,064 - PGA1_c17410 0.53 +1.5
1,822,104 - PGA1_c17410 0.56 -0.0
1,822,109 - PGA1_c17410 0.56 +0.2
1,822,114 - PGA1_c17410 0.57 +1.5
1,822,223 + PGA1_c17410 0.65 +0.1
1,822,245 + PGA1_c17410 0.67 -0.3
1,822,255 + PGA1_c17410 0.68 +1.2
1,822,255 + PGA1_c17410 0.68 +0.2
1,822,255 + PGA1_c17410 0.68 +0.9
1,822,255 + PGA1_c17410 0.68 -0.1
1,822,263 - PGA1_c17410 0.68 +1.8
1,822,326 + PGA1_c17410 0.73 -0.9
1,822,380 - PGA1_c17410 0.78 +0.5
1,822,397 - PGA1_c17410 0.79 -0.5
1,822,431 + PGA1_c17410 0.82 +1.7
1,822,486 + PGA1_c17410 0.86 +0.5
1,822,554 + +0.6
1,822,562 - +0.1
1,822,590 + +0.9
1,822,632 - -0.1
1,822,707 + -2.1
1,822,713 + -0.7
1,822,725 + +0.5
1,822,733 - +1.1
1,822,733 - +0.7
1,822,837 - -2.3
1,822,867 + -0.3
1,822,873 - +1.5
1,822,875 - -0.3
1,822,894 - -1.7
1,822,927 - +0.3
1,823,149 + PGA1_c17420 0.22 -0.0
1,823,375 + PGA1_c17420 0.43 +1.0
1,823,375 + PGA1_c17420 0.43 -0.1
1,823,383 - PGA1_c17420 0.44 +1.2
1,823,383 - PGA1_c17420 0.44 -1.0
1,823,383 - PGA1_c17420 0.44 -1.1
1,823,593 + PGA1_c17420 0.64 +0.1
1,823,593 + PGA1_c17420 0.64 +1.7

Or see this region's nucleotide sequence