Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15240 and PGA1_c15250 are separated by 64 nucleotides PGA1_c15250 and PGA1_c15260 are separated by 204 nucleotides
PGA1_c15240: PGA1_c15240 - two-component system histidine kinase / response regulator, at 1,586,129 to 1,588,444
_c15240
PGA1_c15250: PGA1_c15250 - hypothetical protein, at 1,588,509 to 1,589,102
_c15250
PGA1_c15260: PGA1_c15260 - protein recA (recombinase A), at 1,589,307 to 1,590,374
_c15260
Position (kb)
1588
1589
1590 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1587.549 kb on + strand, within PGA1_c15240 at 1587.554 kb on + strand, within PGA1_c15240 at 1587.591 kb on + strand, within PGA1_c15240 at 1587.599 kb on - strand, within PGA1_c15240 at 1587.609 kb on + strand, within PGA1_c15240 at 1587.609 kb on + strand, within PGA1_c15240 at 1587.617 kb on - strand, within PGA1_c15240 at 1587.656 kb on + strand, within PGA1_c15240 at 1587.779 kb on - strand, within PGA1_c15240 at 1587.884 kb on + strand, within PGA1_c15240 at 1587.884 kb on + strand, within PGA1_c15240 at 1587.905 kb on - strand, within PGA1_c15240 at 1587.912 kb on - strand, within PGA1_c15240 at 1587.941 kb on + strand, within PGA1_c15240 at 1587.949 kb on - strand, within PGA1_c15240 at 1587.986 kb on + strand, within PGA1_c15240 at 1588.012 kb on + strand, within PGA1_c15240 at 1588.153 kb on + strand, within PGA1_c15240 at 1588.153 kb on + strand, within PGA1_c15240 at 1588.153 kb on + strand, within PGA1_c15240 at 1588.163 kb on - strand, within PGA1_c15240 at 1588.200 kb on + strand, within PGA1_c15240 at 1588.208 kb on - strand, within PGA1_c15240 at 1588.265 kb on - strand at 1588.275 kb on - strand at 1588.395 kb on - strand at 1588.395 kb on - strand at 1588.422 kb on - strand at 1588.422 kb on - strand at 1588.446 kb on - strand at 1588.490 kb on - strand at 1588.503 kb on - strand at 1588.512 kb on + strand at 1588.512 kb on + strand at 1588.512 kb on + strand at 1588.525 kb on - strand at 1588.525 kb on - strand at 1588.525 kb on - strand at 1588.656 kb on + strand, within PGA1_c15250 at 1588.967 kb on + strand, within PGA1_c15250 at 1588.973 kb on - strand, within PGA1_c15250 at 1588.973 kb on - strand, within PGA1_c15250 at 1588.973 kb on - strand, within PGA1_c15250 at 1588.973 kb on - strand, within PGA1_c15250 at 1588.973 kb on - strand, within PGA1_c15250 at 1589.030 kb on - strand, within PGA1_c15250 at 1589.142 kb on + strand at 1589.152 kb on + strand at 1589.152 kb on + strand at 1589.152 kb on + strand at 1589.152 kb on + strand at 1589.152 kb on + strand at 1589.152 kb on + strand at 1589.152 kb on + strand at 1589.160 kb on - strand at 1589.160 kb on - strand at 1589.160 kb on - strand at 1589.160 kb on - strand at 1589.160 kb on - strand at 1589.161 kb on - strand at 1589.174 kb on + strand at 1589.179 kb on + strand at 1589.179 kb on + strand at 1589.182 kb on - strand at 1589.290 kb on + strand at 1589.583 kb on + strand, within PGA1_c15260 at 1589.693 kb on + strand, within PGA1_c15260 at 1589.943 kb on + strand, within PGA1_c15260 at 1590.068 kb on + strand, within PGA1_c15260
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,587,549 + PGA1_c15240 0.61 -1.4 1,587,554 + PGA1_c15240 0.62 -0.6 1,587,591 + PGA1_c15240 0.63 -0.3 1,587,599 - PGA1_c15240 0.63 -0.8 1,587,609 + PGA1_c15240 0.64 -1.0 1,587,609 + PGA1_c15240 0.64 -1.8 1,587,617 - PGA1_c15240 0.64 +0.9 1,587,656 + PGA1_c15240 0.66 -0.5 1,587,779 - PGA1_c15240 0.71 -2.8 1,587,884 + PGA1_c15240 0.76 +0.9 1,587,884 + PGA1_c15240 0.76 +0.8 1,587,905 - PGA1_c15240 0.77 -0.1 1,587,912 - PGA1_c15240 0.77 +0.3 1,587,941 + PGA1_c15240 0.78 -0.1 1,587,949 - PGA1_c15240 0.79 -1.4 1,587,986 + PGA1_c15240 0.80 +0.9 1,588,012 + PGA1_c15240 0.81 -0.1 1,588,153 + PGA1_c15240 0.87 -0.9 1,588,153 + PGA1_c15240 0.87 -0.1 1,588,153 + PGA1_c15240 0.87 +0.6 1,588,163 - PGA1_c15240 0.88 +0.3 1,588,200 + PGA1_c15240 0.89 -1.9 1,588,208 - PGA1_c15240 0.90 -1.7 1,588,265 - -2.7 1,588,275 - -0.5 1,588,395 - -0.8 1,588,395 - -1.0 1,588,422 - -1.2 1,588,422 - -0.6 1,588,446 - -0.7 1,588,490 - -0.2 1,588,503 - +0.1 1,588,512 + -0.3 1,588,512 + +0.9 1,588,512 + +0.1 1,588,525 - -0.7 1,588,525 - +1.0 1,588,525 - +0.9 1,588,656 + PGA1_c15250 0.25 -0.7 1,588,967 + PGA1_c15250 0.77 +0.5 1,588,973 - PGA1_c15250 0.78 +0.1 1,588,973 - PGA1_c15250 0.78 +1.9 1,588,973 - PGA1_c15250 0.78 -2.3 1,588,973 - PGA1_c15250 0.78 -0.4 1,588,973 - PGA1_c15250 0.78 +1.3 1,589,030 - PGA1_c15250 0.88 -1.1 1,589,142 + -0.7 1,589,152 + -0.3 1,589,152 + +0.4 1,589,152 + -1.4 1,589,152 + +0.6 1,589,152 + -0.6 1,589,152 + -0.2 1,589,152 + -2.4 1,589,160 - -0.8 1,589,160 - +0.4 1,589,160 - +0.5 1,589,160 - -0.1 1,589,160 - -0.7 1,589,161 - -0.4 1,589,174 + -1.7 1,589,179 + -0.6 1,589,179 + -0.7 1,589,182 - -0.4 1,589,290 + -1.8 1,589,583 + PGA1_c15260 0.26 -1.9 1,589,693 + PGA1_c15260 0.36 -1.4 1,589,943 + PGA1_c15260 0.60 -1.7 1,590,068 + PGA1_c15260 0.71 -1.9
Or see this region's nucleotide sequence