Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15040 and PGA1_c15050 are separated by 83 nucleotides PGA1_c15050 and PGA1_c15060 overlap by 4 nucleotides PGA1_c15060 and PGA1_c15070 are separated by 48 nucleotides PGA1_c15070 and PGA1_c15080 overlap by 2 nucleotides
PGA1_c15040: PGA1_c15040 - Uncharacterized conserved protein, at 1,563,480 to 1,564,172
_c15040
PGA1_c15050: PGA1_c15050 - Uncharacterized enzyme involved in pigment biosynthesis, at 1,564,256 to 1,565,170
_c15050
PGA1_c15060: PGA1_c15060 - carbohydrate kinase, PfkB family, at 1,565,167 to 1,566,126
_c15060
PGA1_c15070: PGA1_c15070 - Nickel uptake substrate-specific transmembrane region., at 1,566,175 to 1,567,020
_c15070
PGA1_c15080: PGA1_c15080 - Hydrogenase/urease accessory protein, at 1,567,019 to 1,568,227
_c15080
Position (kb)
1565
1566
1567 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1564.218 kb on - strand at 1564.228 kb on - strand at 1564.254 kb on - strand at 1564.261 kb on + strand at 1564.269 kb on - strand at 1564.271 kb on + strand at 1564.461 kb on + strand, within PGA1_c15050 at 1564.596 kb on - strand, within PGA1_c15050 at 1564.711 kb on + strand, within PGA1_c15050 at 1564.926 kb on + strand, within PGA1_c15050 at 1564.926 kb on + strand, within PGA1_c15050 at 1564.934 kb on - strand, within PGA1_c15050 at 1564.981 kb on - strand, within PGA1_c15050 at 1565.042 kb on - strand, within PGA1_c15050 at 1565.042 kb on - strand, within PGA1_c15050 at 1565.278 kb on + strand, within PGA1_c15060 at 1565.490 kb on + strand, within PGA1_c15060 at 1565.522 kb on - strand, within PGA1_c15060 at 1565.593 kb on - strand, within PGA1_c15060 at 1565.657 kb on - strand, within PGA1_c15060 at 1565.699 kb on - strand, within PGA1_c15060 at 1565.798 kb on + strand, within PGA1_c15060 at 1565.820 kb on + strand, within PGA1_c15060 at 1565.828 kb on - strand, within PGA1_c15060 at 1565.847 kb on + strand, within PGA1_c15060 at 1565.898 kb on + strand, within PGA1_c15060 at 1565.926 kb on + strand, within PGA1_c15060 at 1566.021 kb on + strand, within PGA1_c15060 at 1566.029 kb on - strand, within PGA1_c15060 at 1566.029 kb on - strand, within PGA1_c15060 at 1566.049 kb on - strand at 1566.068 kb on + strand at 1566.078 kb on - strand at 1566.088 kb on + strand at 1566.190 kb on + strand at 1566.190 kb on + strand at 1566.198 kb on - strand at 1566.198 kb on - strand at 1566.208 kb on - strand at 1566.280 kb on + strand, within PGA1_c15070 at 1566.325 kb on - strand, within PGA1_c15070 at 1566.391 kb on - strand, within PGA1_c15070 at 1566.419 kb on + strand, within PGA1_c15070 at 1566.458 kb on + strand, within PGA1_c15070 at 1566.482 kb on + strand, within PGA1_c15070 at 1566.519 kb on - strand, within PGA1_c15070 at 1566.526 kb on + strand, within PGA1_c15070 at 1566.534 kb on - strand, within PGA1_c15070 at 1566.596 kb on + strand, within PGA1_c15070 at 1566.614 kb on - strand, within PGA1_c15070 at 1566.635 kb on - strand, within PGA1_c15070 at 1566.688 kb on + strand, within PGA1_c15070 at 1566.696 kb on - strand, within PGA1_c15070 at 1566.758 kb on + strand, within PGA1_c15070 at 1566.804 kb on + strand, within PGA1_c15070 at 1566.877 kb on + strand, within PGA1_c15070 at 1566.886 kb on + strand, within PGA1_c15070 at 1566.886 kb on + strand, within PGA1_c15070 at 1566.890 kb on - strand, within PGA1_c15070 at 1566.895 kb on - strand, within PGA1_c15070 at 1566.940 kb on - strand at 1566.946 kb on + strand at 1566.946 kb on + strand at 1566.951 kb on + strand at 1566.954 kb on - strand at 1567.022 kb on + strand at 1567.027 kb on + strand at 1567.027 kb on + strand at 1567.027 kb on + strand at 1567.027 kb on + strand at 1567.030 kb on - strand at 1567.035 kb on - strand at 1567.035 kb on - strand at 1567.117 kb on + strand at 1567.125 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,564,218 - -0.9 1,564,228 - -0.3 1,564,254 - +1.8 1,564,261 + -2.1 1,564,269 - -0.0 1,564,271 + -0.4 1,564,461 + PGA1_c15050 0.22 +0.0 1,564,596 - PGA1_c15050 0.37 -0.6 1,564,711 + PGA1_c15050 0.50 -0.4 1,564,926 + PGA1_c15050 0.73 +1.0 1,564,926 + PGA1_c15050 0.73 -0.7 1,564,934 - PGA1_c15050 0.74 -1.0 1,564,981 - PGA1_c15050 0.79 +0.4 1,565,042 - PGA1_c15050 0.86 -1.0 1,565,042 - PGA1_c15050 0.86 -0.7 1,565,278 + PGA1_c15060 0.12 +1.3 1,565,490 + PGA1_c15060 0.34 +1.1 1,565,522 - PGA1_c15060 0.37 +1.5 1,565,593 - PGA1_c15060 0.44 +0.2 1,565,657 - PGA1_c15060 0.51 -0.4 1,565,699 - PGA1_c15060 0.55 +1.2 1,565,798 + PGA1_c15060 0.66 +0.5 1,565,820 + PGA1_c15060 0.68 -2.3 1,565,828 - PGA1_c15060 0.69 +0.9 1,565,847 + PGA1_c15060 0.71 -0.4 1,565,898 + PGA1_c15060 0.76 +0.4 1,565,926 + PGA1_c15060 0.79 -1.8 1,566,021 + PGA1_c15060 0.89 -1.4 1,566,029 - PGA1_c15060 0.90 +1.5 1,566,029 - PGA1_c15060 0.90 +1.3 1,566,049 - +1.7 1,566,068 + +0.7 1,566,078 - +1.3 1,566,088 + -0.4 1,566,190 + +0.6 1,566,190 + -0.2 1,566,198 - +0.5 1,566,198 - +0.9 1,566,208 - -0.2 1,566,280 + PGA1_c15070 0.12 -0.4 1,566,325 - PGA1_c15070 0.18 +0.7 1,566,391 - PGA1_c15070 0.26 +0.0 1,566,419 + PGA1_c15070 0.29 -1.3 1,566,458 + PGA1_c15070 0.33 +0.3 1,566,482 + PGA1_c15070 0.36 +2.4 1,566,519 - PGA1_c15070 0.41 +0.7 1,566,526 + PGA1_c15070 0.41 -1.3 1,566,534 - PGA1_c15070 0.42 -0.7 1,566,596 + PGA1_c15070 0.50 +0.6 1,566,614 - PGA1_c15070 0.52 +0.7 1,566,635 - PGA1_c15070 0.54 +1.0 1,566,688 + PGA1_c15070 0.61 -0.4 1,566,696 - PGA1_c15070 0.62 +1.7 1,566,758 + PGA1_c15070 0.69 -1.4 1,566,804 + PGA1_c15070 0.74 +0.6 1,566,877 + PGA1_c15070 0.83 -0.1 1,566,886 + PGA1_c15070 0.84 -2.4 1,566,886 + PGA1_c15070 0.84 +0.7 1,566,890 - PGA1_c15070 0.85 -0.6 1,566,895 - PGA1_c15070 0.85 -1.7 1,566,940 - -0.4 1,566,946 + -0.5 1,566,946 + +0.9 1,566,951 + -0.3 1,566,954 - +0.9 1,567,022 + +0.4 1,567,027 + -0.1 1,567,027 + -0.3 1,567,027 + +0.4 1,567,027 + +0.9 1,567,030 - -0.0 1,567,035 - -2.2 1,567,035 - +0.6 1,567,117 + -0.3 1,567,125 - -0.1
Or see this region's nucleotide sequence