Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c13050 and PGA1_c13060 are separated by 84 nucleotides PGA1_c13060 and PGA1_c13070 are separated by 21 nucleotides
PGA1_c13050: PGA1_c13050 - Zn-dependent hydrolases, including glyoxylases, at 1,349,552 to 1,350,466
_c13050
PGA1_c13060: PGA1_c13060 - sensor histidine kinase, at 1,350,551 to 1,351,870
_c13060
PGA1_c13070: PGA1_c13070 - putative oxidoreductase, at 1,351,892 to 1,352,998
_c13070
Position (kb)
1350
1351
1352 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1349.635 kb on - strand at 1349.671 kb on - strand, within PGA1_c13050 at 1349.685 kb on + strand, within PGA1_c13050 at 1349.693 kb on - strand, within PGA1_c13050 at 1349.693 kb on - strand, within PGA1_c13050 at 1349.693 kb on - strand, within PGA1_c13050 at 1349.693 kb on - strand, within PGA1_c13050 at 1349.882 kb on + strand, within PGA1_c13050 at 1349.896 kb on + strand, within PGA1_c13050 at 1349.916 kb on - strand, within PGA1_c13050 at 1350.169 kb on - strand, within PGA1_c13050 at 1350.200 kb on + strand, within PGA1_c13050 at 1350.208 kb on - strand, within PGA1_c13050 at 1350.214 kb on + strand, within PGA1_c13050 at 1350.223 kb on - strand, within PGA1_c13050 at 1350.251 kb on + strand, within PGA1_c13050 at 1350.346 kb on + strand, within PGA1_c13050 at 1350.392 kb on - strand at 1350.464 kb on + strand at 1350.469 kb on + strand at 1350.477 kb on - strand at 1350.477 kb on - strand at 1350.477 kb on - strand at 1350.544 kb on - strand at 1350.581 kb on - strand at 1350.597 kb on + strand at 1350.956 kb on - strand, within PGA1_c13060 at 1351.036 kb on + strand, within PGA1_c13060 at 1351.278 kb on + strand, within PGA1_c13060 at 1351.516 kb on - strand, within PGA1_c13060 at 1351.531 kb on + strand, within PGA1_c13060 at 1351.599 kb on - strand, within PGA1_c13060 at 1351.873 kb on + strand at 1351.875 kb on - strand at 1351.908 kb on - strand at 1351.908 kb on - strand at 1351.922 kb on - strand at 1351.922 kb on - strand at 1351.990 kb on + strand at 1352.091 kb on + strand, within PGA1_c13070 at 1352.116 kb on + strand, within PGA1_c13070 at 1352.124 kb on - strand, within PGA1_c13070 at 1352.136 kb on - strand, within PGA1_c13070 at 1352.150 kb on - strand, within PGA1_c13070 at 1352.168 kb on - strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.183 kb on - strand, within PGA1_c13070 at 1352.183 kb on - strand, within PGA1_c13070 at 1352.183 kb on - strand, within PGA1_c13070 at 1352.250 kb on - strand, within PGA1_c13070 at 1352.278 kb on + strand, within PGA1_c13070 at 1352.279 kb on + strand, within PGA1_c13070 at 1352.286 kb on - strand, within PGA1_c13070 at 1352.336 kb on - strand, within PGA1_c13070 at 1352.347 kb on + strand, within PGA1_c13070 at 1352.399 kb on - strand, within PGA1_c13070 at 1352.421 kb on - strand, within PGA1_c13070 at 1352.456 kb on + strand, within PGA1_c13070 at 1352.615 kb on + strand, within PGA1_c13070 at 1352.654 kb on - strand, within PGA1_c13070 at 1352.664 kb on - strand, within PGA1_c13070 at 1352.675 kb on + strand, within PGA1_c13070 at 1352.818 kb on - strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.829 kb on - strand, within PGA1_c13070 at 1352.862 kb on + strand, within PGA1_c13070
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,349,635 - +1.7 1,349,671 - PGA1_c13050 0.13 -0.3 1,349,685 + PGA1_c13050 0.15 +0.9 1,349,693 - PGA1_c13050 0.15 +0.1 1,349,693 - PGA1_c13050 0.15 +0.5 1,349,693 - PGA1_c13050 0.15 -0.2 1,349,693 - PGA1_c13050 0.15 -1.7 1,349,882 + PGA1_c13050 0.36 +0.2 1,349,896 + PGA1_c13050 0.38 +0.4 1,349,916 - PGA1_c13050 0.40 -0.7 1,350,169 - PGA1_c13050 0.67 +0.5 1,350,200 + PGA1_c13050 0.71 +0.6 1,350,208 - PGA1_c13050 0.72 -1.9 1,350,214 + PGA1_c13050 0.72 +1.2 1,350,223 - PGA1_c13050 0.73 +0.8 1,350,251 + PGA1_c13050 0.76 +0.2 1,350,346 + PGA1_c13050 0.87 +0.2 1,350,392 - -1.1 1,350,464 + +1.3 1,350,469 + -0.5 1,350,477 - +1.9 1,350,477 - -0.4 1,350,477 - -2.4 1,350,544 - -0.6 1,350,581 - -1.9 1,350,597 + +1.3 1,350,956 - PGA1_c13060 0.31 -0.2 1,351,036 + PGA1_c13060 0.37 +0.9 1,351,278 + PGA1_c13060 0.55 -1.4 1,351,516 - PGA1_c13060 0.73 +1.7 1,351,531 + PGA1_c13060 0.74 +0.9 1,351,599 - PGA1_c13060 0.79 -1.4 1,351,873 + -0.6 1,351,875 - -1.8 1,351,908 - +1.7 1,351,908 - +1.5 1,351,922 - +0.1 1,351,922 - -1.9 1,351,990 + -0.9 1,352,091 + PGA1_c13070 0.18 -1.8 1,352,116 + PGA1_c13070 0.20 +0.5 1,352,124 - PGA1_c13070 0.21 -0.2 1,352,136 - PGA1_c13070 0.22 -0.2 1,352,150 - PGA1_c13070 0.23 -1.1 1,352,168 - PGA1_c13070 0.25 +0.0 1,352,175 + PGA1_c13070 0.26 +0.4 1,352,175 + PGA1_c13070 0.26 +0.5 1,352,175 + PGA1_c13070 0.26 +1.6 1,352,175 + PGA1_c13070 0.26 +1.6 1,352,175 + PGA1_c13070 0.26 +0.4 1,352,175 + PGA1_c13070 0.26 -0.0 1,352,183 - PGA1_c13070 0.26 +0.7 1,352,183 - PGA1_c13070 0.26 -0.7 1,352,183 - PGA1_c13070 0.26 +0.9 1,352,250 - PGA1_c13070 0.32 -0.6 1,352,278 + PGA1_c13070 0.35 -1.0 1,352,279 + PGA1_c13070 0.35 -0.4 1,352,286 - PGA1_c13070 0.36 +1.5 1,352,336 - PGA1_c13070 0.40 -0.6 1,352,347 + PGA1_c13070 0.41 +0.9 1,352,399 - PGA1_c13070 0.46 -1.2 1,352,421 - PGA1_c13070 0.48 -0.4 1,352,456 + PGA1_c13070 0.51 +0.0 1,352,615 + PGA1_c13070 0.65 -0.5 1,352,654 - PGA1_c13070 0.69 +0.1 1,352,664 - PGA1_c13070 0.70 -1.5 1,352,675 + PGA1_c13070 0.71 +1.1 1,352,818 - PGA1_c13070 0.84 +0.6 1,352,821 + PGA1_c13070 0.84 +0.4 1,352,821 + PGA1_c13070 0.84 -0.2 1,352,821 + PGA1_c13070 0.84 +0.5 1,352,821 + PGA1_c13070 0.84 +0.6 1,352,821 + PGA1_c13070 0.84 +0.3 1,352,821 + PGA1_c13070 0.84 -0.3 1,352,821 + PGA1_c13070 0.84 +0.9 1,352,829 - PGA1_c13070 0.85 -0.7 1,352,862 + PGA1_c13070 0.88 +0.2
Or see this region's nucleotide sequence