Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12350

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c12340 and PGA1_c12350 overlap by 14 nucleotidesPGA1_c12350 and PGA1_c12360 are separated by 81 nucleotidesPGA1_c12360 and PGA1_c12370 are separated by 103 nucleotides PGA1_c12340: PGA1_c12340 - Predicted acyl-CoA transferases/carnitine dehydratase, at 1,283,034 to 1,284,254 _c12340 PGA1_c12350: PGA1_c12350 - acetolactate synthase, catabolic, at 1,284,241 to 1,285,905 _c12350 PGA1_c12360: PGA1_c12360 - Uncharacterized conserved protein, at 1,285,987 to 1,286,526 _c12360 PGA1_c12370: PGA1_c12370 - YeeE/YedE family (DUF395)., at 1,286,630 to 1,287,700 _c12370 Position (kb) 1284 1285 1286Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1283.302 kb on - strand, within PGA1_c12340at 1283.448 kb on - strand, within PGA1_c12340at 1283.448 kb on - strand, within PGA1_c12340at 1283.510 kb on + strand, within PGA1_c12340at 1283.510 kb on + strand, within PGA1_c12340at 1283.510 kb on - strand, within PGA1_c12340at 1283.544 kb on - strand, within PGA1_c12340at 1283.616 kb on + strand, within PGA1_c12340at 1283.618 kb on - strand, within PGA1_c12340at 1283.648 kb on - strand, within PGA1_c12340at 1283.675 kb on - strand, within PGA1_c12340at 1283.768 kb on - strand, within PGA1_c12340at 1283.817 kb on + strand, within PGA1_c12340at 1283.835 kb on - strand, within PGA1_c12340at 1283.865 kb on + strand, within PGA1_c12340at 1284.071 kb on - strand, within PGA1_c12340at 1284.076 kb on - strand, within PGA1_c12340at 1284.143 kb on + strandat 1284.183 kb on + strandat 1284.183 kb on + strandat 1284.183 kb on + strandat 1284.239 kb on + strandat 1284.239 kb on + strandat 1284.247 kb on - strandat 1284.319 kb on - strandat 1284.319 kb on - strandat 1284.359 kb on - strandat 1284.419 kb on + strand, within PGA1_c12350at 1284.518 kb on + strand, within PGA1_c12350at 1284.526 kb on - strand, within PGA1_c12350at 1284.526 kb on - strand, within PGA1_c12350at 1284.573 kb on - strand, within PGA1_c12350at 1284.625 kb on + strand, within PGA1_c12350at 1284.632 kb on + strand, within PGA1_c12350at 1284.666 kb on + strand, within PGA1_c12350at 1284.666 kb on + strand, within PGA1_c12350at 1284.666 kb on + strand, within PGA1_c12350at 1284.666 kb on + strand, within PGA1_c12350at 1284.666 kb on + strand, within PGA1_c12350at 1284.666 kb on + strand, within PGA1_c12350at 1284.666 kb on + strand, within PGA1_c12350at 1284.674 kb on - strand, within PGA1_c12350at 1284.674 kb on - strand, within PGA1_c12350at 1284.674 kb on - strand, within PGA1_c12350at 1284.674 kb on - strand, within PGA1_c12350at 1284.674 kb on - strand, within PGA1_c12350at 1284.674 kb on - strand, within PGA1_c12350at 1284.674 kb on - strand, within PGA1_c12350at 1284.840 kb on + strand, within PGA1_c12350at 1284.840 kb on + strand, within PGA1_c12350at 1284.972 kb on - strand, within PGA1_c12350at 1285.044 kb on + strand, within PGA1_c12350at 1285.127 kb on - strand, within PGA1_c12350at 1285.171 kb on - strand, within PGA1_c12350at 1285.256 kb on - strand, within PGA1_c12350at 1285.306 kb on + strand, within PGA1_c12350at 1285.329 kb on + strand, within PGA1_c12350at 1285.334 kb on + strand, within PGA1_c12350at 1285.402 kb on + strand, within PGA1_c12350at 1285.438 kb on + strand, within PGA1_c12350at 1285.438 kb on + strand, within PGA1_c12350at 1285.446 kb on - strand, within PGA1_c12350at 1285.475 kb on + strand, within PGA1_c12350at 1285.482 kb on + strand, within PGA1_c12350at 1285.483 kb on - strand, within PGA1_c12350at 1285.563 kb on + strand, within PGA1_c12350at 1285.563 kb on + strand, within PGA1_c12350at 1285.600 kb on + strand, within PGA1_c12350at 1285.608 kb on - strand, within PGA1_c12350at 1285.623 kb on + strand, within PGA1_c12350at 1285.631 kb on - strand, within PGA1_c12350at 1285.647 kb on + strand, within PGA1_c12350at 1285.695 kb on - strand, within PGA1_c12350at 1285.767 kb on - strandat 1285.856 kb on - strandat 1285.864 kb on - strandat 1285.916 kb on - strandat 1285.916 kb on - strandat 1285.926 kb on - strandat 1285.976 kb on - strandat 1285.984 kb on + strandat 1285.984 kb on + strandat 1286.001 kb on + strandat 1286.016 kb on - strandat 1286.029 kb on + strandat 1286.045 kb on + strand, within PGA1_c12360at 1286.061 kb on + strand, within PGA1_c12360at 1286.061 kb on + strand, within PGA1_c12360at 1286.066 kb on + strand, within PGA1_c12360at 1286.072 kb on + strand, within PGA1_c12360at 1286.074 kb on - strand, within PGA1_c12360at 1286.084 kb on - strand, within PGA1_c12360at 1286.084 kb on - strand, within PGA1_c12360at 1286.095 kb on + strand, within PGA1_c12360at 1286.161 kb on + strand, within PGA1_c12360at 1286.218 kb on - strand, within PGA1_c12360at 1286.219 kb on + strand, within PGA1_c12360at 1286.227 kb on - strand, within PGA1_c12360at 1286.281 kb on + strand, within PGA1_c12360at 1286.289 kb on - strand, within PGA1_c12360at 1286.354 kb on + strand, within PGA1_c12360at 1286.354 kb on + strand, within PGA1_c12360at 1286.362 kb on - strand, within PGA1_c12360at 1286.384 kb on - strand, within PGA1_c12360at 1286.441 kb on - strand, within PGA1_c12360at 1286.524 kb on - strandat 1286.525 kb on + strandat 1286.538 kb on + strandat 1286.554 kb on + strandat 1286.554 kb on + strandat 1286.610 kb on + strandat 1286.627 kb on + strandat 1286.668 kb on + strandat 1286.757 kb on + strand, within PGA1_c12370at 1286.757 kb on - strand, within PGA1_c12370at 1286.830 kb on + strand, within PGA1_c12370at 1286.874 kb on + strand, within PGA1_c12370

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,283,302 - PGA1_c12340 0.22 -1.4
1,283,448 - PGA1_c12340 0.34 +0.4
1,283,448 - PGA1_c12340 0.34 -2.0
1,283,510 + PGA1_c12340 0.39 -2.1
1,283,510 + PGA1_c12340 0.39 -0.1
1,283,510 - PGA1_c12340 0.39 -0.4
1,283,544 - PGA1_c12340 0.42 -0.1
1,283,616 + PGA1_c12340 0.48 -1.6
1,283,618 - PGA1_c12340 0.48 -0.8
1,283,648 - PGA1_c12340 0.50 -0.7
1,283,675 - PGA1_c12340 0.52 -0.1
1,283,768 - PGA1_c12340 0.60 +1.9
1,283,817 + PGA1_c12340 0.64 +0.7
1,283,835 - PGA1_c12340 0.66 -0.7
1,283,865 + PGA1_c12340 0.68 +0.1
1,284,071 - PGA1_c12340 0.85 -0.1
1,284,076 - PGA1_c12340 0.85 +0.1
1,284,143 + -0.6
1,284,183 + -1.4
1,284,183 + -1.4
1,284,183 + +0.6
1,284,239 + +1.2
1,284,239 + +2.2
1,284,247 - -0.6
1,284,319 - +0.3
1,284,319 - -0.4
1,284,359 - -0.0
1,284,419 + PGA1_c12350 0.11 +1.1
1,284,518 + PGA1_c12350 0.17 +0.9
1,284,526 - PGA1_c12350 0.17 -1.7
1,284,526 - PGA1_c12350 0.17 +1.9
1,284,573 - PGA1_c12350 0.20 +1.2
1,284,625 + PGA1_c12350 0.23 +0.1
1,284,632 + PGA1_c12350 0.23 +0.3
1,284,666 + PGA1_c12350 0.26 +2.0
1,284,666 + PGA1_c12350 0.26 -0.2
1,284,666 + PGA1_c12350 0.26 -0.4
1,284,666 + PGA1_c12350 0.26 -0.6
1,284,666 + PGA1_c12350 0.26 +1.0
1,284,666 + PGA1_c12350 0.26 +2.7
1,284,666 + PGA1_c12350 0.26 +0.4
1,284,674 - PGA1_c12350 0.26 +0.4
1,284,674 - PGA1_c12350 0.26 +0.8
1,284,674 - PGA1_c12350 0.26 -0.1
1,284,674 - PGA1_c12350 0.26 +0.9
1,284,674 - PGA1_c12350 0.26 +0.6
1,284,674 - PGA1_c12350 0.26 +0.0
1,284,674 - PGA1_c12350 0.26 +0.4
1,284,840 + PGA1_c12350 0.36 +0.4
1,284,840 + PGA1_c12350 0.36 +0.3
1,284,972 - PGA1_c12350 0.44 -1.1
1,285,044 + PGA1_c12350 0.48 +0.3
1,285,127 - PGA1_c12350 0.53 -1.0
1,285,171 - PGA1_c12350 0.56 +1.4
1,285,256 - PGA1_c12350 0.61 +1.0
1,285,306 + PGA1_c12350 0.64 -0.1
1,285,329 + PGA1_c12350 0.65 +0.4
1,285,334 + PGA1_c12350 0.66 +1.4
1,285,402 + PGA1_c12350 0.70 -0.7
1,285,438 + PGA1_c12350 0.72 -1.4
1,285,438 + PGA1_c12350 0.72 +0.3
1,285,446 - PGA1_c12350 0.72 +0.2
1,285,475 + PGA1_c12350 0.74 -1.9
1,285,482 + PGA1_c12350 0.75 +0.2
1,285,483 - PGA1_c12350 0.75 -1.4
1,285,563 + PGA1_c12350 0.79 +0.2
1,285,563 + PGA1_c12350 0.79 +0.2
1,285,600 + PGA1_c12350 0.82 -0.6
1,285,608 - PGA1_c12350 0.82 +1.4
1,285,623 + PGA1_c12350 0.83 +0.2
1,285,631 - PGA1_c12350 0.83 +0.5
1,285,647 + PGA1_c12350 0.84 +0.6
1,285,695 - PGA1_c12350 0.87 +0.8
1,285,767 - -0.1
1,285,856 - +0.4
1,285,864 - +0.3
1,285,916 - -2.6
1,285,916 - +0.3
1,285,926 - -0.8
1,285,976 - +0.1
1,285,984 + +0.6
1,285,984 + -0.8
1,286,001 + -0.1
1,286,016 - -1.7
1,286,029 + +0.4
1,286,045 + PGA1_c12360 0.11 +0.1
1,286,061 + PGA1_c12360 0.14 +0.1
1,286,061 + PGA1_c12360 0.14 +0.9
1,286,066 + PGA1_c12360 0.15 -0.7
1,286,072 + PGA1_c12360 0.16 -0.3
1,286,074 - PGA1_c12360 0.16 -0.7
1,286,084 - PGA1_c12360 0.18 +0.6
1,286,084 - PGA1_c12360 0.18 +3.3
1,286,095 + PGA1_c12360 0.20 +0.4
1,286,161 + PGA1_c12360 0.32 +0.3
1,286,218 - PGA1_c12360 0.43 +0.1
1,286,219 + PGA1_c12360 0.43 +0.7
1,286,227 - PGA1_c12360 0.44 -2.1
1,286,281 + PGA1_c12360 0.54 +1.7
1,286,289 - PGA1_c12360 0.56 +0.7
1,286,354 + PGA1_c12360 0.68 -0.0
1,286,354 + PGA1_c12360 0.68 +0.7
1,286,362 - PGA1_c12360 0.69 +0.7
1,286,384 - PGA1_c12360 0.74 -0.7
1,286,441 - PGA1_c12360 0.84 +0.5
1,286,524 - -0.7
1,286,525 + +0.6
1,286,538 + -0.7
1,286,554 + -0.4
1,286,554 + +1.6
1,286,610 + -0.4
1,286,627 + +0.9
1,286,668 + -2.3
1,286,757 + PGA1_c12370 0.12 +0.1
1,286,757 - PGA1_c12370 0.12 -2.9
1,286,830 + PGA1_c12370 0.19 -2.6
1,286,874 + PGA1_c12370 0.23 -0.9

Or see this region's nucleotide sequence