Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c11520 and PGA1_c11530 overlap by 1 nucleotides PGA1_c11530 and PGA1_c11540 are separated by 93 nucleotides PGA1_c11540 and PGA1_c11550 are separated by 133 nucleotides PGA1_c11550 and PGA1_c11560 overlap by 4 nucleotides
PGA1_c11520: PGA1_c11520 - gamma-glutamylputrescine synthetase PuuA, at 1,191,266 to 1,192,624
_c11520
PGA1_c11530: PGA1_c11530 - putative glutamine amidotransferase class I, at 1,192,624 to 1,193,304
_c11530
PGA1_c11540: PGA1_c11540 - gamma-glutamylputrescine synthetase PuuA, at 1,193,398 to 1,194,744
_c11540
PGA1_c11550: PGA1_c11550 - putative histidine transport system permease protein, at 1,194,878 to 1,195,684
_c11550
PGA1_c11560: PGA1_c11560 - putative arginine transport system permease protein, at 1,195,681 to 1,196,397
_c11560
Position (kb)
1193
1194
1195 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1192.509 kb on + strand at 1192.517 kb on - strand at 1192.524 kb on + strand at 1192.583 kb on + strand at 1192.591 kb on - strand at 1192.591 kb on - strand at 1192.593 kb on + strand at 1192.620 kb on + strand at 1192.693 kb on - strand, within PGA1_c11530 at 1192.736 kb on - strand, within PGA1_c11530 at 1192.802 kb on + strand, within PGA1_c11530 at 1192.802 kb on + strand, within PGA1_c11530 at 1192.802 kb on + strand, within PGA1_c11530 at 1192.802 kb on + strand, within PGA1_c11530 at 1192.802 kb on + strand, within PGA1_c11530 at 1192.802 kb on + strand, within PGA1_c11530 at 1192.802 kb on + strand, within PGA1_c11530 at 1192.802 kb on - strand, within PGA1_c11530 at 1192.810 kb on - strand, within PGA1_c11530 at 1192.810 kb on - strand, within PGA1_c11530 at 1192.810 kb on - strand, within PGA1_c11530 at 1192.810 kb on - strand, within PGA1_c11530 at 1192.879 kb on - strand, within PGA1_c11530 at 1192.879 kb on - strand, within PGA1_c11530 at 1192.883 kb on + strand, within PGA1_c11530 at 1192.958 kb on + strand, within PGA1_c11530 at 1193.001 kb on + strand, within PGA1_c11530 at 1193.016 kb on - strand, within PGA1_c11530 at 1193.126 kb on + strand, within PGA1_c11530 at 1193.189 kb on - strand, within PGA1_c11530 at 1193.189 kb on - strand, within PGA1_c11530 at 1193.263 kb on + strand at 1193.776 kb on + strand, within PGA1_c11540 at 1194.310 kb on - strand, within PGA1_c11540 at 1194.461 kb on - strand, within PGA1_c11540 at 1194.641 kb on + strand at 1194.871 kb on + strand at 1194.879 kb on - strand at 1194.884 kb on + strand at 1194.897 kb on - strand at 1194.956 kb on - strand at 1195.009 kb on + strand, within PGA1_c11550 at 1195.012 kb on - strand, within PGA1_c11550 at 1195.029 kb on - strand, within PGA1_c11550 at 1195.059 kb on + strand, within PGA1_c11550 at 1195.059 kb on + strand, within PGA1_c11550 at 1195.059 kb on + strand, within PGA1_c11550 at 1195.230 kb on - strand, within PGA1_c11550 at 1195.230 kb on - strand, within PGA1_c11550 at 1195.305 kb on + strand, within PGA1_c11550 at 1195.310 kb on - strand, within PGA1_c11550 at 1195.342 kb on - strand, within PGA1_c11550 at 1195.342 kb on - strand, within PGA1_c11550 at 1195.423 kb on + strand, within PGA1_c11550 at 1195.482 kb on - strand, within PGA1_c11550 at 1195.482 kb on - strand, within PGA1_c11550 at 1195.567 kb on + strand, within PGA1_c11550 at 1195.625 kb on + strand at 1195.636 kb on + strand at 1195.644 kb on - strand at 1195.666 kb on - strand at 1195.677 kb on - strand at 1195.693 kb on + strand at 1195.701 kb on - strand at 1195.701 kb on - strand at 1195.731 kb on + strand at 1195.739 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,192,509 + +0.6 1,192,517 - +0.9 1,192,524 + -2.1 1,192,583 + -2.2 1,192,591 - +0.3 1,192,591 - -0.1 1,192,593 + +1.1 1,192,620 + +1.0 1,192,693 - PGA1_c11530 0.10 -1.7 1,192,736 - PGA1_c11530 0.16 -0.8 1,192,802 + PGA1_c11530 0.26 -0.5 1,192,802 + PGA1_c11530 0.26 +0.9 1,192,802 + PGA1_c11530 0.26 -0.6 1,192,802 + PGA1_c11530 0.26 +0.8 1,192,802 + PGA1_c11530 0.26 +0.9 1,192,802 + PGA1_c11530 0.26 +0.1 1,192,802 + PGA1_c11530 0.26 -1.1 1,192,802 - PGA1_c11530 0.26 +0.3 1,192,810 - PGA1_c11530 0.27 +0.6 1,192,810 - PGA1_c11530 0.27 -0.3 1,192,810 - PGA1_c11530 0.27 +0.9 1,192,810 - PGA1_c11530 0.27 +1.1 1,192,879 - PGA1_c11530 0.37 +1.6 1,192,879 - PGA1_c11530 0.37 +0.9 1,192,883 + PGA1_c11530 0.38 -2.8 1,192,958 + PGA1_c11530 0.49 -0.1 1,193,001 + PGA1_c11530 0.55 +0.9 1,193,016 - PGA1_c11530 0.58 +0.3 1,193,126 + PGA1_c11530 0.74 -1.7 1,193,189 - PGA1_c11530 0.83 +0.5 1,193,189 - PGA1_c11530 0.83 +0.2 1,193,263 + +0.9 1,193,776 + PGA1_c11540 0.28 +1.3 1,194,310 - PGA1_c11540 0.68 +3.2 1,194,461 - PGA1_c11540 0.79 +0.3 1,194,641 + +1.3 1,194,871 + +1.0 1,194,879 - -0.6 1,194,884 + +1.2 1,194,897 - -0.7 1,194,956 - +0.2 1,195,009 + PGA1_c11550 0.16 -0.1 1,195,012 - PGA1_c11550 0.17 +0.7 1,195,029 - PGA1_c11550 0.19 +2.2 1,195,059 + PGA1_c11550 0.22 -0.0 1,195,059 + PGA1_c11550 0.22 +0.3 1,195,059 + PGA1_c11550 0.22 +0.0 1,195,230 - PGA1_c11550 0.44 +0.6 1,195,230 - PGA1_c11550 0.44 +0.2 1,195,305 + PGA1_c11550 0.53 +0.9 1,195,310 - PGA1_c11550 0.54 +0.5 1,195,342 - PGA1_c11550 0.57 -1.1 1,195,342 - PGA1_c11550 0.57 +1.9 1,195,423 + PGA1_c11550 0.68 +0.2 1,195,482 - PGA1_c11550 0.75 +0.6 1,195,482 - PGA1_c11550 0.75 +0.9 1,195,567 + PGA1_c11550 0.85 -2.2 1,195,625 + +0.1 1,195,636 + -1.7 1,195,644 - -1.3 1,195,666 - +0.7 1,195,677 - +0.6 1,195,693 + -0.7 1,195,701 - -0.4 1,195,701 - +0.9 1,195,731 + +0.1 1,195,739 + +0.7
Or see this region's nucleotide sequence