Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c11200 and PGA1_c11210 are separated by 110 nucleotides PGA1_c11210 and PGA1_c11220 are separated by 75 nucleotides PGA1_c11220 and PGA1_c11230 are separated by 29 nucleotides PGA1_c11230 and PGA1_c11240 are separated by 119 nucleotides
PGA1_c11200: PGA1_c11200 - putative deoxycytidine triphosphate deaminase, at 1,157,196 to 1,158,305
_c11200
PGA1_c11210: PGA1_c11210 - tRNA-Pro, at 1,158,416 to 1,158,492
_c11210
PGA1_c11220: PGA1_c11220 - Predicted transcriptional regulators, at 1,158,568 to 1,162,032
_c11220
PGA1_c11230: PGA1_c11230 - integration host factor subunit alpha, at 1,162,062 to 1,162,364
_c11230
PGA1_c11240: PGA1_c11240 - 3-oxoacyl-[acyl-carrier-protein] synthase 3, at 1,162,484 to 1,163,455
_c11240
Position (kb)
1158
1159
1160
1161
1162
1163 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1157.581 kb on - strand, within PGA1_c11200 at 1157.586 kb on - strand, within PGA1_c11200 at 1157.622 kb on + strand, within PGA1_c11200 at 1157.630 kb on - strand, within PGA1_c11200 at 1157.697 kb on - strand, within PGA1_c11200 at 1157.701 kb on - strand, within PGA1_c11200 at 1157.777 kb on - strand, within PGA1_c11200 at 1157.925 kb on - strand, within PGA1_c11200 at 1158.059 kb on + strand, within PGA1_c11200 at 1158.116 kb on - strand, within PGA1_c11200 at 1158.178 kb on + strand, within PGA1_c11200 at 1158.265 kb on + strand at 1158.269 kb on + strand at 1158.273 kb on - strand at 1158.277 kb on - strand at 1158.374 kb on - strand at 1158.573 kb on - strand at 1158.577 kb on + strand at 1158.585 kb on - strand at 1158.655 kb on - strand at 1158.775 kb on - strand at 1158.824 kb on - strand at 1158.831 kb on + strand at 1158.831 kb on + strand at 1158.831 kb on + strand at 1158.831 kb on + strand at 1158.841 kb on + strand at 1158.875 kb on - strand at 1158.956 kb on + strand, within PGA1_c11220 at 1158.956 kb on + strand, within PGA1_c11220 at 1158.969 kb on - strand, within PGA1_c11220 at 1158.969 kb on - strand, within PGA1_c11220 at 1159.005 kb on + strand, within PGA1_c11220 at 1159.005 kb on + strand, within PGA1_c11220 at 1159.013 kb on - strand, within PGA1_c11220 at 1159.013 kb on - strand, within PGA1_c11220 at 1159.013 kb on - strand, within PGA1_c11220 at 1159.223 kb on + strand, within PGA1_c11220 at 1159.223 kb on + strand, within PGA1_c11220 at 1159.231 kb on - strand, within PGA1_c11220 at 1159.259 kb on - strand, within PGA1_c11220 at 1159.280 kb on - strand, within PGA1_c11220 at 1159.301 kb on + strand, within PGA1_c11220 at 1159.307 kb on + strand, within PGA1_c11220 at 1159.309 kb on - strand, within PGA1_c11220 at 1159.361 kb on + strand, within PGA1_c11220 at 1159.361 kb on + strand, within PGA1_c11220 at 1159.361 kb on + strand, within PGA1_c11220 at 1159.361 kb on + strand, within PGA1_c11220 at 1159.369 kb on - strand, within PGA1_c11220 at 1159.369 kb on - strand, within PGA1_c11220 at 1159.399 kb on - strand, within PGA1_c11220 at 1159.436 kb on + strand, within PGA1_c11220 at 1159.536 kb on + strand, within PGA1_c11220 at 1159.612 kb on - strand, within PGA1_c11220 at 1159.637 kb on + strand, within PGA1_c11220 at 1159.676 kb on - strand, within PGA1_c11220 at 1159.758 kb on - strand, within PGA1_c11220 at 1159.874 kb on - strand, within PGA1_c11220 at 1160.001 kb on + strand, within PGA1_c11220 at 1160.034 kb on + strand, within PGA1_c11220 at 1160.037 kb on + strand, within PGA1_c11220 at 1160.038 kb on - strand, within PGA1_c11220 at 1160.333 kb on - strand, within PGA1_c11220 at 1160.342 kb on - strand, within PGA1_c11220 at 1160.355 kb on + strand, within PGA1_c11220 at 1160.373 kb on - strand, within PGA1_c11220 at 1160.393 kb on + strand, within PGA1_c11220 at 1160.393 kb on + strand, within PGA1_c11220 at 1160.393 kb on + strand, within PGA1_c11220 at 1160.401 kb on - strand, within PGA1_c11220 at 1160.401 kb on - strand, within PGA1_c11220 at 1160.491 kb on - strand, within PGA1_c11220 at 1160.581 kb on - strand, within PGA1_c11220 at 1160.593 kb on - strand, within PGA1_c11220 at 1160.620 kb on + strand, within PGA1_c11220 at 1160.647 kb on - strand, within PGA1_c11220 at 1160.865 kb on - strand, within PGA1_c11220 at 1160.919 kb on + strand, within PGA1_c11220 at 1161.003 kb on + strand, within PGA1_c11220 at 1161.026 kb on - strand, within PGA1_c11220 at 1161.073 kb on - strand, within PGA1_c11220 at 1161.098 kb on + strand, within PGA1_c11220 at 1161.113 kb on + strand, within PGA1_c11220 at 1161.116 kb on - strand, within PGA1_c11220 at 1161.684 kb on + strand, within PGA1_c11220 at 1161.724 kb on + strand at 1161.745 kb on - strand at 1161.862 kb on - strand at 1161.909 kb on - strand at 1161.931 kb on - strand at 1161.941 kb on - strand at 1161.964 kb on - strand at 1162.017 kb on - strand at 1162.033 kb on + strand at 1162.043 kb on + strand at 1162.043 kb on + strand at 1162.047 kb on - strand at 1162.059 kb on - strand at 1162.480 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,157,581 - PGA1_c11200 0.35 -0.8 1,157,586 - PGA1_c11200 0.35 -0.1 1,157,622 + PGA1_c11200 0.38 +1.0 1,157,630 - PGA1_c11200 0.39 +0.7 1,157,697 - PGA1_c11200 0.45 -0.4 1,157,701 - PGA1_c11200 0.45 +0.3 1,157,777 - PGA1_c11200 0.52 -0.0 1,157,925 - PGA1_c11200 0.66 -0.3 1,158,059 + PGA1_c11200 0.78 +0.6 1,158,116 - PGA1_c11200 0.83 -1.3 1,158,178 + PGA1_c11200 0.88 +1.5 1,158,265 + -0.2 1,158,269 + +1.3 1,158,273 - -0.8 1,158,277 - -1.4 1,158,374 - -0.0 1,158,573 - +2.0 1,158,577 + +0.1 1,158,585 - -2.1 1,158,655 - +0.9 1,158,775 - -1.4 1,158,824 - +1.0 1,158,831 + +0.5 1,158,831 + +0.9 1,158,831 + +0.9 1,158,831 + +0.7 1,158,841 + +1.2 1,158,875 - +0.8 1,158,956 + PGA1_c11220 0.11 +0.9 1,158,956 + PGA1_c11220 0.11 +0.8 1,158,969 - PGA1_c11220 0.12 +1.3 1,158,969 - PGA1_c11220 0.12 +0.1 1,159,005 + PGA1_c11220 0.13 +1.1 1,159,005 + PGA1_c11220 0.13 +0.6 1,159,013 - PGA1_c11220 0.13 -1.0 1,159,013 - PGA1_c11220 0.13 -0.3 1,159,013 - PGA1_c11220 0.13 +0.2 1,159,223 + PGA1_c11220 0.19 +0.9 1,159,223 + PGA1_c11220 0.19 +0.2 1,159,231 - PGA1_c11220 0.19 +0.7 1,159,259 - PGA1_c11220 0.20 +1.6 1,159,280 - PGA1_c11220 0.21 +0.9 1,159,301 + PGA1_c11220 0.21 -0.1 1,159,307 + PGA1_c11220 0.21 +1.1 1,159,309 - PGA1_c11220 0.21 +1.2 1,159,361 + PGA1_c11220 0.23 +1.5 1,159,361 + PGA1_c11220 0.23 -0.3 1,159,361 + PGA1_c11220 0.23 +1.3 1,159,361 + PGA1_c11220 0.23 +0.1 1,159,369 - PGA1_c11220 0.23 +0.9 1,159,369 - PGA1_c11220 0.23 +0.9 1,159,399 - PGA1_c11220 0.24 +1.3 1,159,436 + PGA1_c11220 0.25 -1.1 1,159,536 + PGA1_c11220 0.28 -0.3 1,159,612 - PGA1_c11220 0.30 +1.2 1,159,637 + PGA1_c11220 0.31 -0.1 1,159,676 - PGA1_c11220 0.32 +0.7 1,159,758 - PGA1_c11220 0.34 +0.8 1,159,874 - PGA1_c11220 0.38 +0.2 1,160,001 + PGA1_c11220 0.41 +2.8 1,160,034 + PGA1_c11220 0.42 +0.3 1,160,037 + PGA1_c11220 0.42 +0.7 1,160,038 - PGA1_c11220 0.42 +0.3 1,160,333 - PGA1_c11220 0.51 +0.0 1,160,342 - PGA1_c11220 0.51 +1.5 1,160,355 + PGA1_c11220 0.52 +1.3 1,160,373 - PGA1_c11220 0.52 +1.2 1,160,393 + PGA1_c11220 0.53 +0.6 1,160,393 + PGA1_c11220 0.53 +1.0 1,160,393 + PGA1_c11220 0.53 +1.2 1,160,401 - PGA1_c11220 0.53 +1.4 1,160,401 - PGA1_c11220 0.53 +0.2 1,160,491 - PGA1_c11220 0.55 -0.6 1,160,581 - PGA1_c11220 0.58 +0.9 1,160,593 - PGA1_c11220 0.58 +1.6 1,160,620 + PGA1_c11220 0.59 +0.0 1,160,647 - PGA1_c11220 0.60 -0.3 1,160,865 - PGA1_c11220 0.66 -1.3 1,160,919 + PGA1_c11220 0.68 -0.1 1,161,003 + PGA1_c11220 0.70 +0.5 1,161,026 - PGA1_c11220 0.71 +1.4 1,161,073 - PGA1_c11220 0.72 +0.7 1,161,098 + PGA1_c11220 0.73 +0.7 1,161,113 + PGA1_c11220 0.73 +1.6 1,161,116 - PGA1_c11220 0.74 +0.8 1,161,684 + PGA1_c11220 0.90 +0.1 1,161,724 + +1.6 1,161,745 - +2.2 1,161,862 - -0.6 1,161,909 - +1.1 1,161,931 - -0.5 1,161,941 - +0.4 1,161,964 - +0.9 1,162,017 - +0.7 1,162,033 + -0.4 1,162,043 + +0.6 1,162,043 + +1.6 1,162,047 - +1.4 1,162,059 - +1.6 1,162,480 + +1.3
Or see this region's nucleotide sequence