Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01120

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01110 and PGA1_c01120 are separated by 146 nucleotidesPGA1_c01120 and PGA1_c01130 are separated by 58 nucleotides PGA1_c01110: PGA1_c01110 - acyl-CoA dehydrogenase, at 102,983 to 104,668 _c01110 PGA1_c01120: PGA1_c01120 - sulfite exporter tauE/safE-like protein, at 104,815 to 105,603 _c01120 PGA1_c01130: PGA1_c01130 - putative cation efflux pump, at 105,662 to 106,561 _c01130 Position (kb) 104 105 106Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 103.843 kb on + strand, within PGA1_c01110at 103.928 kb on - strand, within PGA1_c01110at 103.928 kb on - strand, within PGA1_c01110at 103.930 kb on + strand, within PGA1_c01110at 103.946 kb on + strand, within PGA1_c01110at 103.954 kb on - strand, within PGA1_c01110at 103.954 kb on - strand, within PGA1_c01110at 103.954 kb on - strand, within PGA1_c01110at 103.961 kb on - strand, within PGA1_c01110at 103.961 kb on - strand, within PGA1_c01110at 103.961 kb on - strand, within PGA1_c01110at 103.961 kb on - strand, within PGA1_c01110at 103.963 kb on + strand, within PGA1_c01110at 103.963 kb on + strand, within PGA1_c01110at 103.963 kb on + strand, within PGA1_c01110at 103.963 kb on + strand, within PGA1_c01110at 104.052 kb on + strand, within PGA1_c01110at 104.053 kb on - strand, within PGA1_c01110at 104.080 kb on + strand, within PGA1_c01110at 104.151 kb on - strand, within PGA1_c01110at 104.151 kb on - strand, within PGA1_c01110at 104.174 kb on - strand, within PGA1_c01110at 104.174 kb on - strand, within PGA1_c01110at 104.174 kb on - strand, within PGA1_c01110at 104.195 kb on - strand, within PGA1_c01110at 104.223 kb on - strand, within PGA1_c01110at 104.240 kb on + strand, within PGA1_c01110at 104.245 kb on + strand, within PGA1_c01110at 104.314 kb on - strand, within PGA1_c01110at 104.334 kb on + strand, within PGA1_c01110at 104.342 kb on - strand, within PGA1_c01110at 104.409 kb on + strand, within PGA1_c01110at 104.409 kb on + strand, within PGA1_c01110at 104.417 kb on - strand, within PGA1_c01110at 104.417 kb on - strand, within PGA1_c01110at 104.417 kb on - strand, within PGA1_c01110at 104.417 kb on - strand, within PGA1_c01110at 104.417 kb on - strand, within PGA1_c01110at 104.419 kb on + strand, within PGA1_c01110at 104.419 kb on - strand, within PGA1_c01110at 104.454 kb on - strand, within PGA1_c01110at 104.454 kb on - strand, within PGA1_c01110at 104.456 kb on - strand, within PGA1_c01110at 104.474 kb on - strand, within PGA1_c01110at 104.497 kb on - strand, within PGA1_c01110at 104.527 kb on + strandat 104.647 kb on + strandat 104.647 kb on + strandat 104.671 kb on + strandat 104.679 kb on + strandat 104.806 kb on + strandat 104.806 kb on + strandat 104.811 kb on + strandat 104.814 kb on - strandat 104.849 kb on + strandat 104.854 kb on + strandat 104.854 kb on + strandat 104.854 kb on + strandat 104.856 kb on + strandat 104.862 kb on - strandat 104.862 kb on - strandat 104.862 kb on - strandat 104.862 kb on - strandat 104.864 kb on + strandat 104.864 kb on + strandat 104.864 kb on + strandat 104.864 kb on - strandat 104.872 kb on - strandat 104.883 kb on - strandat 104.883 kb on - strandat 104.952 kb on - strand, within PGA1_c01120at 104.957 kb on + strand, within PGA1_c01120at 104.962 kb on + strand, within PGA1_c01120at 104.965 kb on - strand, within PGA1_c01120at 105.008 kb on - strand, within PGA1_c01120at 105.036 kb on - strand, within PGA1_c01120at 105.117 kb on + strand, within PGA1_c01120at 105.117 kb on + strand, within PGA1_c01120at 105.122 kb on + strand, within PGA1_c01120at 105.130 kb on - strand, within PGA1_c01120at 105.160 kb on - strand, within PGA1_c01120at 105.297 kb on + strand, within PGA1_c01120at 105.340 kb on - strand, within PGA1_c01120at 105.357 kb on + strand, within PGA1_c01120at 105.405 kb on - strand, within PGA1_c01120at 105.414 kb on + strand, within PGA1_c01120at 105.424 kb on + strand, within PGA1_c01120at 105.424 kb on + strand, within PGA1_c01120at 105.424 kb on + strand, within PGA1_c01120at 105.427 kb on - strand, within PGA1_c01120at 105.432 kb on - strand, within PGA1_c01120at 105.435 kb on + strand, within PGA1_c01120at 105.440 kb on + strand, within PGA1_c01120at 105.473 kb on - strand, within PGA1_c01120at 105.510 kb on + strand, within PGA1_c01120at 105.538 kb on - strandat 105.617 kb on + strandat 105.651 kb on + strandat 105.707 kb on - strandat 105.737 kb on - strandat 105.737 kb on - strandat 105.737 kb on - strandat 105.745 kb on - strandat 105.782 kb on + strand, within PGA1_c01130at 105.790 kb on - strand, within PGA1_c01130at 105.790 kb on - strand, within PGA1_c01130at 105.823 kb on - strand, within PGA1_c01130at 105.833 kb on - strand, within PGA1_c01130at 105.880 kb on + strand, within PGA1_c01130at 105.910 kb on - strand, within PGA1_c01130at 105.935 kb on + strand, within PGA1_c01130at 106.001 kb on + strand, within PGA1_c01130at 106.001 kb on + strand, within PGA1_c01130at 106.009 kb on - strand, within PGA1_c01130at 106.069 kb on + strand, within PGA1_c01130at 106.112 kb on + strand, within PGA1_c01130at 106.135 kb on - strand, within PGA1_c01130at 106.145 kb on + strand, within PGA1_c01130at 106.153 kb on - strand, within PGA1_c01130at 106.207 kb on - strand, within PGA1_c01130at 106.247 kb on + strand, within PGA1_c01130at 106.254 kb on - strand, within PGA1_c01130at 106.255 kb on - strand, within PGA1_c01130at 106.277 kb on + strand, within PGA1_c01130at 106.311 kb on - strand, within PGA1_c01130at 106.369 kb on + strand, within PGA1_c01130at 106.380 kb on + strand, within PGA1_c01130at 106.384 kb on + strand, within PGA1_c01130at 106.463 kb on + strand, within PGA1_c01130at 106.498 kb on + strandat 106.507 kb on - strandat 106.537 kb on - strandat 106.548 kb on + strandat 106.553 kb on + strandat 106.553 kb on + strandat 106.556 kb on - strandat 106.601 kb on + strandat 106.601 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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103,843 + PGA1_c01110 0.51 +0.5
103,928 - PGA1_c01110 0.56 +1.3
103,928 - PGA1_c01110 0.56 -1.2
103,930 + PGA1_c01110 0.56 +0.3
103,946 + PGA1_c01110 0.57 +0.6
103,954 - PGA1_c01110 0.58 -1.7
103,954 - PGA1_c01110 0.58 +0.8
103,954 - PGA1_c01110 0.58 +0.5
103,961 - PGA1_c01110 0.58 -0.1
103,961 - PGA1_c01110 0.58 -0.4
103,961 - PGA1_c01110 0.58 -1.7
103,961 - PGA1_c01110 0.58 +1.8
103,963 + PGA1_c01110 0.58 +0.3
103,963 + PGA1_c01110 0.58 +0.3
103,963 + PGA1_c01110 0.58 +0.8
103,963 + PGA1_c01110 0.58 +0.5
104,052 + PGA1_c01110 0.63 +0.7
104,053 - PGA1_c01110 0.63 -0.3
104,080 + PGA1_c01110 0.65 -1.0
104,151 - PGA1_c01110 0.69 -0.3
104,151 - PGA1_c01110 0.69 -0.6
104,174 - PGA1_c01110 0.71 +0.6
104,174 - PGA1_c01110 0.71 -1.6
104,174 - PGA1_c01110 0.71 +2.1
104,195 - PGA1_c01110 0.72 -1.0
104,223 - PGA1_c01110 0.74 -0.2
104,240 + PGA1_c01110 0.75 -1.7
104,245 + PGA1_c01110 0.75 -0.4
104,314 - PGA1_c01110 0.79 -0.7
104,334 + PGA1_c01110 0.80 +1.4
104,342 - PGA1_c01110 0.81 +0.2
104,409 + PGA1_c01110 0.85 -0.4
104,409 + PGA1_c01110 0.85 -0.2
104,417 - PGA1_c01110 0.85 +0.6
104,417 - PGA1_c01110 0.85 -0.1
104,417 - PGA1_c01110 0.85 -0.6
104,417 - PGA1_c01110 0.85 +0.2
104,417 - PGA1_c01110 0.85 +0.5
104,419 + PGA1_c01110 0.85 -0.4
104,419 - PGA1_c01110 0.85 +1.5
104,454 - PGA1_c01110 0.87 +1.7
104,454 - PGA1_c01110 0.87 +1.6
104,456 - PGA1_c01110 0.87 +1.2
104,474 - PGA1_c01110 0.88 +1.0
104,497 - PGA1_c01110 0.90 +0.3
104,527 + +0.8
104,647 + +0.1
104,647 + +0.6
104,671 + -0.4
104,679 + -0.9
104,806 + -0.2
104,806 + +0.0
104,811 + -2.1
104,814 - -3.3
104,849 + +0.3
104,854 + -2.3
104,854 + -1.5
104,854 + -1.7
104,856 + -0.7
104,862 - -1.0
104,862 - +0.0
104,862 - -0.2
104,862 - -0.7
104,864 + +0.4
104,864 + +0.7
104,864 + +0.8
104,864 - -1.7
104,872 - -1.7
104,883 - +1.1
104,883 - +0.4
104,952 - PGA1_c01120 0.17 +0.5
104,957 + PGA1_c01120 0.18 +0.3
104,962 + PGA1_c01120 0.19 -0.7
104,965 - PGA1_c01120 0.19 -0.5
105,008 - PGA1_c01120 0.24 -0.2
105,036 - PGA1_c01120 0.28 -0.4
105,117 + PGA1_c01120 0.38 -0.6
105,117 + PGA1_c01120 0.38 +0.3
105,122 + PGA1_c01120 0.39 -0.4
105,130 - PGA1_c01120 0.40 -1.1
105,160 - PGA1_c01120 0.44 -0.5
105,297 + PGA1_c01120 0.61 +1.3
105,340 - PGA1_c01120 0.67 -1.0
105,357 + PGA1_c01120 0.69 -0.3
105,405 - PGA1_c01120 0.75 -0.2
105,414 + PGA1_c01120 0.76 +1.4
105,424 + PGA1_c01120 0.77 -0.7
105,424 + PGA1_c01120 0.77 -1.0
105,424 + PGA1_c01120 0.77 +1.1
105,427 - PGA1_c01120 0.78 +1.4
105,432 - PGA1_c01120 0.78 -0.6
105,435 + PGA1_c01120 0.79 +0.1
105,440 + PGA1_c01120 0.79 +0.4
105,473 - PGA1_c01120 0.83 -0.1
105,510 + PGA1_c01120 0.88 -0.2
105,538 - +0.5
105,617 + +0.2
105,651 + -0.7
105,707 - +0.6
105,737 - -0.0
105,737 - +2.0
105,737 - -0.1
105,745 - -1.3
105,782 + PGA1_c01130 0.13 -0.2
105,790 - PGA1_c01130 0.14 -1.5
105,790 - PGA1_c01130 0.14 +0.3
105,823 - PGA1_c01130 0.18 -0.6
105,833 - PGA1_c01130 0.19 +0.4
105,880 + PGA1_c01130 0.24 +0.5
105,910 - PGA1_c01130 0.28 +0.2
105,935 + PGA1_c01130 0.30 -0.7
106,001 + PGA1_c01130 0.38 +0.3
106,001 + PGA1_c01130 0.38 +1.2
106,009 - PGA1_c01130 0.39 +2.3
106,069 + PGA1_c01130 0.45 +2.5
106,112 + PGA1_c01130 0.50 -2.1
106,135 - PGA1_c01130 0.53 +0.5
106,145 + PGA1_c01130 0.54 +0.3
106,153 - PGA1_c01130 0.55 +0.8
106,207 - PGA1_c01130 0.61 -0.1
106,247 + PGA1_c01130 0.65 +0.1
106,254 - PGA1_c01130 0.66 +0.7
106,255 - PGA1_c01130 0.66 -0.6
106,277 + PGA1_c01130 0.68 -1.7
106,311 - PGA1_c01130 0.72 -0.7
106,369 + PGA1_c01130 0.79 +0.4
106,380 + PGA1_c01130 0.80 -0.7
106,384 + PGA1_c01130 0.80 -0.4
106,463 + PGA1_c01130 0.89 -1.3
106,498 + -0.0
106,507 - +0.9
106,537 - -0.2
106,548 + +0.8
106,553 + +0.8
106,553 + +0.0
106,556 - +1.0
106,601 + -0.2
106,601 + -1.5

Or see this region's nucleotide sequence