Experiment: L-Malic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_988 and HP15_989 are separated by 245 nucleotides HP15_989 and HP15_990 are separated by 27 nucleotides
HP15_988: HP15_988 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein, at 997,559 to 998,374
_988
HP15_989: HP15_989 - conserved hypothetical protein, at 998,620 to 998,844
_989
HP15_990: HP15_990 - taurine catabolism dioxygenase TauD/TfdA, at 998,872 to 999,963
_990
Position (kb) 998
999 Strain fitness (log2 ratio) -2
-1
0
1 at 997.648 kb on + strand, within HP15_988 at 997.839 kb on - strand, within HP15_988 at 997.890 kb on + strand, within HP15_988 at 997.895 kb on + strand, within HP15_988 at 997.952 kb on - strand, within HP15_988 at 997.959 kb on + strand, within HP15_988 at 998.018 kb on - strand, within HP15_988 at 998.100 kb on + strand, within HP15_988 at 998.108 kb on - strand, within HP15_988 at 998.283 kb on + strand, within HP15_988 at 998.339 kb on + strand at 998.383 kb on - strand at 998.392 kb on + strand at 998.474 kb on + strand at 998.482 kb on - strand at 998.482 kb on - strand at 998.482 kb on - strand at 998.539 kb on - strand at 998.625 kb on - strand at 998.716 kb on + strand, within HP15_989 at 998.717 kb on + strand, within HP15_989 at 998.790 kb on - strand, within HP15_989 at 998.957 kb on - strand at 998.957 kb on - strand at 998.990 kb on - strand, within HP15_990 at 999.035 kb on - strand, within HP15_990 at 999.233 kb on - strand, within HP15_990 at 999.233 kb on - strand, within HP15_990 at 999.233 kb on - strand, within HP15_990 at 999.237 kb on + strand, within HP15_990 at 999.242 kb on + strand, within HP15_990 at 999.295 kb on + strand, within HP15_990 at 999.311 kb on + strand, within HP15_990 at 999.329 kb on - strand, within HP15_990 at 999.366 kb on + strand, within HP15_990 at 999.460 kb on - strand, within HP15_990 at 999.597 kb on + strand, within HP15_990 at 999.597 kb on + strand, within HP15_990 at 999.605 kb on - strand, within HP15_990 at 999.605 kb on - strand, within HP15_990 at 999.641 kb on - strand, within HP15_990 at 999.643 kb on - strand, within HP15_990
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic remove 997,648 + HP15_988 0.11 -0.2 997,839 - HP15_988 0.34 +0.7 997,890 + HP15_988 0.41 -0.9 997,895 + HP15_988 0.41 -1.0 997,952 - HP15_988 0.48 +0.1 997,959 + HP15_988 0.49 -0.8 998,018 - HP15_988 0.56 -1.8 998,100 + HP15_988 0.66 +0.3 998,108 - HP15_988 0.67 +1.7 998,283 + HP15_988 0.89 +0.7 998,339 + -0.0 998,383 - -0.3 998,392 + -0.6 998,474 + -1.4 998,482 - +0.4 998,482 - -0.2 998,482 - -0.1 998,539 - +0.5 998,625 - +0.7 998,716 + HP15_989 0.43 -0.6 998,717 + HP15_989 0.43 +0.7 998,790 - HP15_989 0.76 +1.1 998,957 - -1.1 998,957 - +0.7 998,990 - HP15_990 0.11 -0.5 999,035 - HP15_990 0.15 +0.4 999,233 - HP15_990 0.33 +0.1 999,233 - HP15_990 0.33 +0.7 999,233 - HP15_990 0.33 +1.0 999,237 + HP15_990 0.33 -0.0 999,242 + HP15_990 0.34 -0.3 999,295 + HP15_990 0.39 +0.2 999,311 + HP15_990 0.40 -1.2 999,329 - HP15_990 0.42 +0.6 999,366 + HP15_990 0.45 +0.5 999,460 - HP15_990 0.54 -0.4 999,597 + HP15_990 0.66 -0.5 999,597 + HP15_990 0.66 +0.5 999,605 - HP15_990 0.67 -0.3 999,605 - HP15_990 0.67 +1.1 999,641 - HP15_990 0.70 +0.6 999,643 - HP15_990 0.71 -0.4
Or see this region's nucleotide sequence