Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16890

Experiment: reconstituted MRS with Maltodextrin 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Maltodextrin 0.5 %w/v
1,560,834	+		BBR_RS16885	0.21	-0.4
1,560,834	+		BBR_RS16885	0.21	-0.4
1,560,842	+		BBR_RS16885	0.22	-0.4
1,560,842	+		BBR_RS16885	0.22	-0.1
1,560,842	+		BBR_RS16885	0.22	+0.3
1,560,875	-		BBR_RS16885	0.26	-0.5
1,560,917	-		BBR_RS16885	0.31	+0.2
1,560,953	+		BBR_RS16885	0.35	+0.1
1,560,981	+		BBR_RS16885	0.38	+0.1
1,560,994	+		BBR_RS16885	0.39	+0.3
1,561,019	+		BBR_RS16885	0.42	+0.2
1,561,019	+		BBR_RS16885	0.42	-0.4
1,561,027	-		BBR_RS16885	0.43	+0.0
1,561,040	+		BBR_RS16885	0.44	-0.2
1,561,040	+		BBR_RS16885	0.44	+0.1
1,561,059	-		BBR_RS16885	0.46	-0.4
1,561,107	+		BBR_RS16885	0.52	-0.1
1,561,137	+		BBR_RS16885	0.55	+0.5
1,561,137	+		BBR_RS16885	0.55	+0.9
1,561,137	+		BBR_RS16885	0.55	+0.5
1,561,137	+		BBR_RS16885	0.55	+1.0
1,561,145	-		BBR_RS16885	0.56	-0.6
1,561,176	+		BBR_RS16885	0.59	-1.2
1,561,213	+		BBR_RS16885	0.64	+0.2
1,561,222	-		BBR_RS16885	0.65	+1.0
1,561,241	+		BBR_RS16885	0.67	-0.1
1,561,249	-		BBR_RS16885	0.68	-1.0
1,561,273	-		BBR_RS16885	0.70	-1.0
1,561,353	+		BBR_RS16885	0.79	-0.2
1,561,353	+		BBR_RS16885	0.79	-0.1
1,561,353	+		BBR_RS16885	0.79	-0.2
1,561,353	+		BBR_RS16885	0.79	-0.6
1,561,353	+		BBR_RS16885	0.79	-0.1
1,561,361	-		BBR_RS16885	0.80	-0.3
1,561,361	-		BBR_RS16885	0.80	-0.2
1,561,361	-		BBR_RS16885	0.80	+0.6
1,561,378	+		BBR_RS16885	0.82	+0.6
1,561,399	+		BBR_RS16885	0.84	-0.4
1,561,399	-		BBR_RS16885	0.84	-0.6
1,561,444	+		BBR_RS16885	0.89	+0.2
1,561,444	+		BBR_RS16885	0.89	+0.7
1,561,542	-				-1.7
1,561,553	-				-0.7
1,561,561	-				+0.3
1,561,565	-				+0.3
1,561,600	+				+0.1
1,561,600	+				+0.0
1,561,608	-				-0.5
1,561,754	+				+0.0
1,561,815	-				-0.5
1,561,827	+				+0.5
1,561,880	-		BBR_RS16890	0.21	+0.1
1,561,902	-		BBR_RS16890	0.26	-0.3
1,561,912	-		BBR_RS16890	0.29	-0.8
1,561,993	+		BBR_RS16890	0.48	-0.1
1,562,023	+		BBR_RS16890	0.55	-0.7
1,562,023	+		BBR_RS16890	0.55	-0.8
1,562,076	-		BBR_RS16890	0.68	-1.4
1,562,084	+		BBR_RS16890	0.70	-0.3
1,562,182	+				-0.2
1,562,323	+		BBR_RS16895	0.24	-0.6
1,562,323	+		BBR_RS16895	0.24	+0.5
1,562,361	+		BBR_RS16895	0.30	-0.1
1,562,405	+		BBR_RS16895	0.38	+0.6
1,562,452	+		BBR_RS16895	0.46	+0.2
1,562,460	-		BBR_RS16895	0.47	+0.3
1,562,474	+		BBR_RS16895	0.50	-0.4
1,562,482	-		BBR_RS16895	0.51	+0.2
1,562,482	-		BBR_RS16895	0.51	-0.5
1,562,484	+		BBR_RS16895	0.51	+0.3
1,562,498	-		BBR_RS16895	0.54	-0.3
1,562,517	-		BBR_RS16895	0.57	-0.4
1,562,518	-		BBR_RS16895	0.57	-0.3
1,562,518	-		BBR_RS16895	0.57	+0.5
1,562,536	+		BBR_RS16895	0.60	+0.2
1,562,544	+		BBR_RS16895	0.62	+1.5
1,562,544	-		BBR_RS16895	0.62	-0.4
1,562,544	-		BBR_RS16895	0.62	-0.5
1,562,586	+		BBR_RS16895	0.69	+1.5
1,562,597	+		BBR_RS16895	0.71	+0.1
1,562,597	+		BBR_RS16895	0.71	-0.3
1,562,639	+		BBR_RS16895	0.78	-2.1
1,562,668	-		BBR_RS16895	0.83	+0.6
1,562,718	+				-0.5
1,562,759	-				+0.1
1,562,764	-				-0.5
1,562,799	-				-1.2
1,562,816	+				+1.0
1,562,816	+				+0.4
1,562,819	-				-0.6
1,562,834	-				+0.0
1,562,834	-				+0.2
1,562,851	-				-0.7
1,562,865	+				+1.4
1,562,889	-				+0.7
1,562,889	-				+0.5
1,562,941	+		BBR_RS16900	0.13	-1.5
1,563,001	-		BBR_RS16900	0.25	-0.2
1,563,009	-		BBR_RS16900	0.27	+1.0
1,563,009	-		BBR_RS16900	0.27	+0.8
1,563,025	-		BBR_RS16900	0.30	-2.3
1,563,042	+		BBR_RS16900	0.34	-0.1
1,563,139	+		BBR_RS16900	0.53	+0.4
1,563,141	+		BBR_RS16900	0.54	+0.6
1,563,206	-		BBR_RS16900	0.67	-0.4