Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15685

Experiment: reconstituted MRS with Maltodextrin 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Maltodextrin 0.5 %w/v
1,286,584	+				+0.4
1,286,597	-				+0.9
1,286,600	+				+0.5
1,286,600	+				+0.0
1,286,600	+				-0.4
1,286,632	+				+0.0
1,286,656	+				-3.3
1,286,656	+				-0.4
1,286,656	+				-3.3
1,286,656	+				-2.7
1,286,664	-				+0.5
1,286,664	-				-1.3
1,286,688	-				-2.7
1,286,688	-				-1.1
1,286,701	-				-2.1
1,286,735	-		BBR_RS15680	0.13	-0.3
1,286,750	-		BBR_RS15680	0.14	-0.6
1,286,858	-		BBR_RS15680	0.26	-1.8
1,286,973	+		BBR_RS15680	0.39	-1.8
1,286,983	+		BBR_RS15680	0.40	-0.8
1,286,983	+		BBR_RS15680	0.40	-0.8
1,286,983	+		BBR_RS15680	0.40	-2.6
1,286,983	+		BBR_RS15680	0.40	-1.0
1,286,983	+		BBR_RS15680	0.40	+0.1
1,286,990	+		BBR_RS15680	0.41	-1.9
1,287,003	-		BBR_RS15680	0.42	-0.3
1,287,023	+		BBR_RS15680	0.44	-2.7
1,287,095	+		BBR_RS15680	0.52	-1.8
1,287,124	-		BBR_RS15680	0.55	-2.4
1,287,177	-		BBR_RS15680	0.61	-0.7
1,287,177	-		BBR_RS15680	0.61	-2.2
1,287,198	+		BBR_RS15680	0.64	-2.0
1,287,198	+		BBR_RS15680	0.64	-0.9
1,287,198	+		BBR_RS15680	0.64	+0.8
1,287,198	+		BBR_RS15680	0.64	-0.1
1,287,206	-		BBR_RS15680	0.64	-2.7
1,287,206	-		BBR_RS15680	0.64	-2.8
1,287,307	+		BBR_RS15680	0.76	-1.2
1,287,461	-				-0.8
1,287,464	+				-1.7
1,287,471	-				-2.1
1,287,483	-				-3.7
1,287,498	-				+0.6
1,287,621	+				-3.2
1,287,621	+				-2.2
1,287,629	-				+0.8
1,287,661	+				-1.4
1,287,661	+				-3.5
1,287,697	+		BBR_RS15685	0.11	-3.1
1,287,723	-		BBR_RS15685	0.13	-0.6
1,287,757	+		BBR_RS15685	0.15	-1.3
1,287,757	+		BBR_RS15685	0.15	-0.9
1,287,757	+		BBR_RS15685	0.15	-3.1
1,287,765	-		BBR_RS15685	0.16	-1.1
1,287,769	+		BBR_RS15685	0.16	-2.8
1,287,769	+		BBR_RS15685	0.16	-1.7
1,287,790	-		BBR_RS15685	0.17	-0.5
1,287,800	-		BBR_RS15685	0.18	-2.9
1,287,805	-		BBR_RS15685	0.18	-1.1
1,287,830	+		BBR_RS15685	0.20	-3.7
1,287,866	-		BBR_RS15685	0.23	-2.4
1,287,866	-		BBR_RS15685	0.23	-2.8
1,287,922	-		BBR_RS15685	0.27	-3.2
1,287,927	-		BBR_RS15685	0.27	-1.8
1,287,953	+		BBR_RS15685	0.29	-3.8
1,287,961	-		BBR_RS15685	0.30	-0.9
1,287,997	+		BBR_RS15685	0.32	-2.9
1,288,005	+		BBR_RS15685	0.33	-0.2
1,288,007	+		BBR_RS15685	0.33	-2.5
1,288,007	+		BBR_RS15685	0.33	-1.9
1,288,015	-		BBR_RS15685	0.34	-0.9
1,288,015	-		BBR_RS15685	0.34	-2.0
1,288,024	-		BBR_RS15685	0.34	-2.3
1,288,069	-		BBR_RS15685	0.38	-0.8
1,288,111	+		BBR_RS15685	0.41	-1.6
1,288,119	-		BBR_RS15685	0.41	-3.4
1,288,174	-		BBR_RS15685	0.45	-2.6
1,288,236	-		BBR_RS15685	0.50	-1.1
1,288,281	-		BBR_RS15685	0.53	-1.4
1,288,288	+		BBR_RS15685	0.53	-1.6
1,288,301	-		BBR_RS15685	0.54	-2.1
1,288,326	-		BBR_RS15685	0.56	-1.9
1,288,330	+		BBR_RS15685	0.56	-0.8
1,288,330	+		BBR_RS15685	0.56	-1.7
1,288,335	+		BBR_RS15685	0.57	-1.8
1,288,335	+		BBR_RS15685	0.57	-3.2
1,288,338	-		BBR_RS15685	0.57	-2.6
1,288,340	+		BBR_RS15685	0.57	-0.5
1,288,340	+		BBR_RS15685	0.57	-3.2
1,288,348	-		BBR_RS15685	0.58	-2.1
1,288,348	-		BBR_RS15685	0.58	-2.0
1,288,348	-		BBR_RS15685	0.58	-2.6
1,288,348	-		BBR_RS15685	0.58	-3.1
1,288,348	-		BBR_RS15685	0.58	-1.3
1,288,348	-		BBR_RS15685	0.58	-1.4
1,288,348	-		BBR_RS15685	0.58	-0.7
1,288,367	-		BBR_RS15685	0.59	-2.5
1,288,387	-		BBR_RS15685	0.60	-2.7
1,288,387	-		BBR_RS15685	0.60	-0.6
1,288,393	-		BBR_RS15685	0.61	-2.3
1,288,401	+		BBR_RS15685	0.61	-1.9
1,288,421	-		BBR_RS15685	0.63	-2.6
1,288,470	-		BBR_RS15685	0.66	-1.6
1,288,470	-		BBR_RS15685	0.66	-2.7
1,288,494	+		BBR_RS15685	0.68	-2.0
1,288,507	-		BBR_RS15685	0.69	-2.1
1,288,507	-		BBR_RS15685	0.69	-3.8
1,288,539	+		BBR_RS15685	0.71	-1.6
1,288,612	-		BBR_RS15685	0.77	-3.2
1,288,657	+		BBR_RS15685	0.80	-1.9
1,288,700	+		BBR_RS15685	0.83	-0.9
1,288,708	-		BBR_RS15685	0.84	-2.3
1,288,823	+				-1.6
1,288,842	-				-0.8