Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002459

Experiment: Cinnamic and Ethanols

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cinnamic and Ethanols
2,762,233	+		ABIE53_002458	0.55	+0.2
2,762,233	+		ABIE53_002458	0.55	+0.3
2,762,234	-		ABIE53_002458	0.56	-0.7
2,762,234	-		ABIE53_002458	0.56	+0.2
2,762,234	-		ABIE53_002458	0.56	-0.3
2,762,234	-		ABIE53_002458	0.56	-0.1
2,762,234	-		ABIE53_002458	0.56	+0.8
2,762,252	+		ABIE53_002458	0.57	+1.4
2,762,253	-		ABIE53_002458	0.57	-1.2
2,762,386	+		ABIE53_002458	0.65	+2.5
2,762,386	+		ABIE53_002458	0.65	+0.5
2,762,387	-		ABIE53_002458	0.65	+0.5
2,762,443	+		ABIE53_002458	0.69	-0.1
2,762,460	+		ABIE53_002458	0.70	+0.5
2,762,460	+		ABIE53_002458	0.70	+0.6
2,762,460	+		ABIE53_002458	0.70	+0.2
2,762,460	+		ABIE53_002458	0.70	-0.5
2,762,460	+		ABIE53_002458	0.70	-0.5
2,762,461	-		ABIE53_002458	0.70	+0.0
2,762,461	-		ABIE53_002458	0.70	+0.0
2,762,464	+		ABIE53_002458	0.70	-0.5
2,762,464	+		ABIE53_002458	0.70	-0.4
2,762,464	+		ABIE53_002458	0.70	-0.3
2,762,464	+		ABIE53_002458	0.70	+0.8
2,762,464	+		ABIE53_002458	0.70	-1.5
2,762,464	+		ABIE53_002458	0.70	-0.5
2,762,465	-		ABIE53_002458	0.70	-1.3
2,762,465	-		ABIE53_002458	0.70	-0.1
2,762,465	-		ABIE53_002458	0.70	-0.5
2,762,465	-		ABIE53_002458	0.70	-0.7
2,762,655	+		ABIE53_002458	0.82	-0.0
2,762,655	+		ABIE53_002458	0.82	-0.5
2,762,655	+		ABIE53_002458	0.82	+1.2
2,762,655	+		ABIE53_002458	0.82	-0.4
2,762,655	+		ABIE53_002458	0.82	-0.5
2,762,656	-		ABIE53_002458	0.83	+0.1
2,762,656	-		ABIE53_002458	0.83	-0.6
2,762,656	-		ABIE53_002458	0.83	+0.2
2,762,656	-		ABIE53_002458	0.83	+0.5
2,762,656	-		ABIE53_002458	0.83	-1.7
2,762,656	-		ABIE53_002458	0.83	-1.4
2,762,696	-		ABIE53_002458	0.85	+1.1
2,762,696	-		ABIE53_002458	0.85	-1.1
2,762,696	-		ABIE53_002458	0.85	+1.9
2,762,696	-		ABIE53_002458	0.85	+0.8
2,762,762	-		ABIE53_002458	0.89	-0.7
2,763,117	+				-1.2
2,763,118	-				-0.9
2,763,118	-				-1.6
2,763,175	+		ABIE53_002459	0.13	+1.8
2,763,232	+		ABIE53_002459	0.17	-1.5
2,763,232	+		ABIE53_002459	0.17	-1.1
2,763,232	+		ABIE53_002459	0.17	-1.5
2,763,232	+		ABIE53_002459	0.17	+0.0
2,763,233	-		ABIE53_002459	0.17	+0.8
2,763,233	-		ABIE53_002459	0.17	+1.1
2,763,233	-		ABIE53_002459	0.17	-2.7
2,763,233	-		ABIE53_002459	0.17	-0.9
2,763,233	-		ABIE53_002459	0.17	-0.2
2,763,233	-		ABIE53_002459	0.17	+0.5
2,763,233	-		ABIE53_002459	0.17	-0.1
2,763,234	-		ABIE53_002459	0.17	+0.3
2,763,295	+		ABIE53_002459	0.22	+0.0
2,763,295	+		ABIE53_002459	0.22	-0.8
2,763,295	+		ABIE53_002459	0.22	-0.5
2,763,295	+		ABIE53_002459	0.22	+1.5
2,763,295	+		ABIE53_002459	0.22	-1.9
2,763,296	-		ABIE53_002459	0.22	-0.5
2,763,296	-		ABIE53_002459	0.22	-0.2
2,763,296	-		ABIE53_002459	0.22	-0.2
2,763,296	-		ABIE53_002459	0.22	+1.0
2,763,296	-		ABIE53_002459	0.22	-0.9
2,763,372	+		ABIE53_002459	0.27	-1.5
2,763,406	+		ABIE53_002459	0.29	+0.6
2,763,406	+		ABIE53_002459	0.29	-0.1
2,763,406	+		ABIE53_002459	0.29	+0.0
2,763,406	+		ABIE53_002459	0.29	+2.5
2,763,406	+		ABIE53_002459	0.29	+2.1
2,763,406	+		ABIE53_002459	0.29	-0.4
2,763,406	+		ABIE53_002459	0.29	-0.5
2,763,406	+		ABIE53_002459	0.29	-0.1
2,763,407	-		ABIE53_002459	0.29	-0.7
2,763,407	-		ABIE53_002459	0.29	+1.5
2,763,421	+		ABIE53_002459	0.30	+0.2
2,763,422	-		ABIE53_002459	0.30	-0.5
2,763,539	-		ABIE53_002459	0.38	-0.6
2,763,539	-		ABIE53_002459	0.38	+0.5
2,763,539	-		ABIE53_002459	0.38	+0.9
2,763,539	-		ABIE53_002459	0.38	-0.7
2,763,539	-		ABIE53_002459	0.38	-2.1
2,763,539	-		ABIE53_002459	0.38	-1.1
2,763,539	-		ABIE53_002459	0.38	-1.1
2,763,542	+		ABIE53_002459	0.38	+0.0
2,763,542	+		ABIE53_002459	0.38	-1.4
2,763,542	+		ABIE53_002459	0.38	-0.5
2,763,543	-		ABIE53_002459	0.39	-0.4
2,763,543	-		ABIE53_002459	0.39	+0.7
2,763,643	+		ABIE53_002459	0.45	+1.2
2,763,643	+		ABIE53_002459	0.45	-0.1
2,763,643	+		ABIE53_002459	0.45	+1.1
2,763,644	-		ABIE53_002459	0.45	-2.2
2,763,678	+		ABIE53_002459	0.48	+1.2
2,763,757	+		ABIE53_002459	0.53	-3.7
2,763,757	+		ABIE53_002459	0.53	+1.5
2,763,758	-		ABIE53_002459	0.53	-1.1
2,763,775	-		ABIE53_002459	0.55	-0.7
2,763,796	-		ABIE53_002459	0.56	+1.5
2,763,977	+		ABIE53_002459	0.68	+1.0
2,764,165	+		ABIE53_002459	0.81	-0.5
2,764,165	+		ABIE53_002459	0.81	-0.4
2,764,166	-		ABIE53_002459	0.81	+0.1
2,764,199	+		ABIE53_002459	0.84	+0.5
2,764,199	+		ABIE53_002459	0.84	+0.7
2,764,311	+				-0.2
2,764,311	+				+0.4
2,764,312	-				-1.8
2,764,312	-				-0.2
2,764,312	-				-0.9
2,764,312	-				+1.5
2,764,312	-				+1.0
2,764,312	-				+0.3
2,764,315	+				-0.2
2,764,315	+				+0.1
2,764,315	+				+0.5
2,764,315	+				+0.5
2,764,315	+				+0.9
2,764,315	+				+0.1
2,764,315	+				+0.5
2,764,315	+				+0.3
2,764,315	+				+0.5
2,764,315	+				-0.5
2,764,316	-				+1.1
2,764,316	-				-0.2
2,764,316	-				+0.1
2,764,316	-				-1.4
2,764,316	-				+0.5
2,764,316	-				-0.9
2,764,316	-				-0.7
2,764,316	-				-0.2
2,764,316	-				-1.1
2,764,316	-				-0.1
2,764,316	-				+0.5
2,764,316	-				-0.3
2,764,364	+				-1.1
2,764,364	+				-0.1
2,764,364	+				+0.1
2,764,474	+				-0.3
2,764,475	-				+2.7
2,764,589	+		ABIE53_002460	0.14	+1.5
2,764,590	-		ABIE53_002460	0.14	+1.6
2,764,742	+		ABIE53_002460	0.30	+0.8
2,764,742	+		ABIE53_002460	0.30	-1.1
2,764,783	-		ABIE53_002460	0.35	+2.1
2,764,918	+		ABIE53_002460	0.49	+0.5
2,764,918	+		ABIE53_002460	0.49	-0.9
2,764,919	-		ABIE53_002460	0.49	+2.0
2,764,963	+		ABIE53_002460	0.54	-1.1
2,765,132	-		ABIE53_002460	0.72	+0.9
2,765,132	-		ABIE53_002460	0.72	+2.0
2,765,132	-		ABIE53_002460	0.72	+1.0
2,765,132	-		ABIE53_002460	0.72	+2.5
2,765,140	+		ABIE53_002460	0.73	+0.6
2,765,141	-		ABIE53_002460	0.73	+3.5
2,765,244	+		ABIE53_002460	0.84	-0.2
2,765,244	+		ABIE53_002460	0.84	+0.3
2,765,244	+		ABIE53_002460	0.84	-0.5
2,765,245	-		ABIE53_002460	0.84	+0.0
2,765,271	-		ABIE53_002460	0.87	+1.7
2,765,433	+				+0.3