Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000804

Experiment: Cinnamic and Ethanols

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000802 and ABIE53_000803 are separated by 111 nucleotidesABIE53_000803 and ABIE53_000804 are separated by 34 nucleotidesABIE53_000804 and ABIE53_000805 are separated by 44 nucleotidesABIE53_000805 and ABIE53_000806 are separated by 40 nucleotides ABIE53_000802: ABIE53_000802 - putative porin, at 870,771 to 871,883 _000802 ABIE53_000803: ABIE53_000803 - lactoylglutathione lyase, at 871,995 to 872,381 _000803 ABIE53_000804: ABIE53_000804 - putative metal-dependent hydrolase, at 872,416 to 873,285 _000804 ABIE53_000805: ABIE53_000805 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 873,330 to 874,088 _000805 ABIE53_000806: ABIE53_000806 - D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase, at 874,129 to 874,683 _000806 Position (kb) 872 873 874Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 871.455 kb on + strand, within ABIE53_000802at 871.455 kb on + strand, within ABIE53_000802at 871.456 kb on - strand, within ABIE53_000802at 871.483 kb on + strand, within ABIE53_000802at 871.484 kb on - strand, within ABIE53_000802at 871.488 kb on + strand, within ABIE53_000802at 871.488 kb on + strand, within ABIE53_000802at 871.488 kb on + strand, within ABIE53_000802at 871.488 kb on + strand, within ABIE53_000802at 871.488 kb on + strand, within ABIE53_000802at 871.488 kb on + strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.489 kb on - strand, within ABIE53_000802at 871.569 kb on + strand, within ABIE53_000802at 871.570 kb on - strand, within ABIE53_000802at 871.708 kb on - strand, within ABIE53_000802at 871.725 kb on + strand, within ABIE53_000802at 871.725 kb on + strand, within ABIE53_000802at 871.725 kb on + strand, within ABIE53_000802at 871.725 kb on + strand, within ABIE53_000802at 871.725 kb on + strand, within ABIE53_000802at 871.725 kb on + strand, within ABIE53_000802at 871.726 kb on - strand, within ABIE53_000802at 871.726 kb on - strand, within ABIE53_000802at 871.752 kb on + strand, within ABIE53_000802at 871.752 kb on + strand, within ABIE53_000802at 871.752 kb on + strand, within ABIE53_000802at 871.753 kb on - strand, within ABIE53_000802at 871.753 kb on - strand, within ABIE53_000802at 871.753 kb on - strand, within ABIE53_000802at 871.768 kb on - strand, within ABIE53_000802at 871.768 kb on - strand, within ABIE53_000802at 871.768 kb on - strand, within ABIE53_000802at 871.776 kb on + strandat 871.777 kb on - strandat 871.954 kb on + strandat 871.989 kb on + strandat 871.989 kb on + strandat 871.989 kb on + strandat 871.990 kb on - strandat 871.990 kb on - strandat 872.052 kb on + strand, within ABIE53_000803at 872.077 kb on + strand, within ABIE53_000803at 872.130 kb on + strand, within ABIE53_000803at 872.131 kb on - strand, within ABIE53_000803at 872.171 kb on + strand, within ABIE53_000803at 872.171 kb on + strand, within ABIE53_000803at 872.171 kb on + strand, within ABIE53_000803at 872.171 kb on + strand, within ABIE53_000803at 872.171 kb on + strand, within ABIE53_000803at 872.172 kb on - strand, within ABIE53_000803at 872.172 kb on - strand, within ABIE53_000803at 872.172 kb on - strand, within ABIE53_000803at 872.172 kb on - strand, within ABIE53_000803at 872.172 kb on - strand, within ABIE53_000803at 872.172 kb on - strand, within ABIE53_000803at 872.172 kb on - strand, within ABIE53_000803at 872.190 kb on + strand, within ABIE53_000803at 872.190 kb on + strand, within ABIE53_000803at 872.190 kb on + strand, within ABIE53_000803at 872.191 kb on - strand, within ABIE53_000803at 872.191 kb on - strand, within ABIE53_000803at 872.191 kb on - strand, within ABIE53_000803at 872.191 kb on - strand, within ABIE53_000803at 872.242 kb on - strand, within ABIE53_000803at 872.242 kb on - strand, within ABIE53_000803at 872.349 kb on + strandat 872.350 kb on - strandat 872.350 kb on - strandat 872.379 kb on + strandat 872.379 kb on + strandat 872.379 kb on + strandat 872.379 kb on + strandat 872.379 kb on + strandat 872.379 kb on + strandat 872.380 kb on - strandat 872.380 kb on - strandat 872.380 kb on - strandat 872.380 kb on - strandat 872.398 kb on + strandat 872.398 kb on + strandat 872.399 kb on - strandat 872.399 kb on - strandat 872.543 kb on + strand, within ABIE53_000804at 872.543 kb on + strand, within ABIE53_000804at 872.543 kb on + strand, within ABIE53_000804at 872.543 kb on + strand, within ABIE53_000804at 872.543 kb on + strand, within ABIE53_000804at 872.543 kb on + strand, within ABIE53_000804at 872.544 kb on - strand, within ABIE53_000804at 872.544 kb on - strand, within ABIE53_000804at 872.551 kb on - strand, within ABIE53_000804at 872.645 kb on + strand, within ABIE53_000804at 872.654 kb on + strand, within ABIE53_000804at 872.654 kb on + strand, within ABIE53_000804at 872.654 kb on + strand, within ABIE53_000804at 872.654 kb on + strand, within ABIE53_000804at 872.655 kb on - strand, within ABIE53_000804at 872.655 kb on - strand, within ABIE53_000804at 872.679 kb on - strand, within ABIE53_000804at 872.679 kb on - strand, within ABIE53_000804at 873.077 kb on + strand, within ABIE53_000804at 873.078 kb on - strand, within ABIE53_000804at 873.171 kb on + strand, within ABIE53_000804at 873.171 kb on + strand, within ABIE53_000804at 873.171 kb on + strand, within ABIE53_000804at 873.271 kb on - strandat 873.271 kb on - strandat 873.271 kb on - strandat 873.271 kb on - strandat 873.306 kb on + strandat 873.306 kb on + strandat 873.306 kb on + strandat 873.307 kb on - strandat 873.307 kb on - strandat 873.497 kb on - strand, within ABIE53_000805at 873.776 kb on - strand, within ABIE53_000805at 873.799 kb on + strand, within ABIE53_000805at 873.799 kb on + strand, within ABIE53_000805at 873.799 kb on + strand, within ABIE53_000805at 873.800 kb on - strand, within ABIE53_000805at 873.914 kb on - strand, within ABIE53_000805at 874.044 kb on + strandat 874.055 kb on - strandat 874.055 kb on - strandat 874.055 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cinnamic and Ethanols
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871,455 + ABIE53_000802 0.61 +1.8
871,455 + ABIE53_000802 0.61 +0.5
871,456 - ABIE53_000802 0.62 -0.6
871,483 + ABIE53_000802 0.64 -1.3
871,484 - ABIE53_000802 0.64 -0.6
871,488 + ABIE53_000802 0.64 +0.1
871,488 + ABIE53_000802 0.64 +0.8
871,488 + ABIE53_000802 0.64 +0.0
871,488 + ABIE53_000802 0.64 -1.2
871,488 + ABIE53_000802 0.64 -0.1
871,488 + ABIE53_000802 0.64 -0.1
871,489 - ABIE53_000802 0.65 +0.0
871,489 - ABIE53_000802 0.65 -0.1
871,489 - ABIE53_000802 0.65 +0.0
871,489 - ABIE53_000802 0.65 -0.5
871,489 - ABIE53_000802 0.65 -0.2
871,489 - ABIE53_000802 0.65 +0.1
871,489 - ABIE53_000802 0.65 +0.1
871,489 - ABIE53_000802 0.65 +0.5
871,489 - ABIE53_000802 0.65 +0.9
871,489 - ABIE53_000802 0.65 +1.3
871,569 + ABIE53_000802 0.72 -0.4
871,570 - ABIE53_000802 0.72 +1.8
871,708 - ABIE53_000802 0.84 -0.5
871,725 + ABIE53_000802 0.86 -0.2
871,725 + ABIE53_000802 0.86 -0.6
871,725 + ABIE53_000802 0.86 -0.2
871,725 + ABIE53_000802 0.86 -0.0
871,725 + ABIE53_000802 0.86 -0.6
871,725 + ABIE53_000802 0.86 +2.3
871,726 - ABIE53_000802 0.86 -0.6
871,726 - ABIE53_000802 0.86 +0.4
871,752 + ABIE53_000802 0.88 -1.6
871,752 + ABIE53_000802 0.88 +0.4
871,752 + ABIE53_000802 0.88 -0.1
871,753 - ABIE53_000802 0.88 +1.0
871,753 - ABIE53_000802 0.88 -2.5
871,753 - ABIE53_000802 0.88 -0.6
871,768 - ABIE53_000802 0.90 +0.6
871,768 - ABIE53_000802 0.90 -0.9
871,768 - ABIE53_000802 0.90 +0.9
871,776 + +1.3
871,777 - -0.2
871,954 + -1.1
871,989 + -0.4
871,989 + -1.3
871,989 + -0.7
871,990 - +0.5
871,990 - -0.2
872,052 + ABIE53_000803 0.15 +0.0
872,077 + ABIE53_000803 0.21 -0.1
872,130 + ABIE53_000803 0.35 -1.9
872,131 - ABIE53_000803 0.35 +2.5
872,171 + ABIE53_000803 0.45 +0.4
872,171 + ABIE53_000803 0.45 +0.8
872,171 + ABIE53_000803 0.45 -0.5
872,171 + ABIE53_000803 0.45 -1.5
872,171 + ABIE53_000803 0.45 -1.2
872,172 - ABIE53_000803 0.46 -1.1
872,172 - ABIE53_000803 0.46 -0.3
872,172 - ABIE53_000803 0.46 +0.2
872,172 - ABIE53_000803 0.46 -0.3
872,172 - ABIE53_000803 0.46 -0.3
872,172 - ABIE53_000803 0.46 -0.2
872,172 - ABIE53_000803 0.46 -1.8
872,190 + ABIE53_000803 0.50 -0.8
872,190 + ABIE53_000803 0.50 -1.4
872,190 + ABIE53_000803 0.50 +0.2
872,191 - ABIE53_000803 0.51 +1.1
872,191 - ABIE53_000803 0.51 -1.0
872,191 - ABIE53_000803 0.51 +0.9
872,191 - ABIE53_000803 0.51 -2.8
872,242 - ABIE53_000803 0.64 +0.1
872,242 - ABIE53_000803 0.64 -0.8
872,349 + +3.1
872,350 - +0.4
872,350 - +0.2
872,379 + -0.3
872,379 + +1.5
872,379 + -0.2
872,379 + +0.2
872,379 + -1.4
872,379 + +0.0
872,380 - -0.6
872,380 - -0.7
872,380 - -0.5
872,380 - -0.7
872,398 + +0.1
872,398 + -0.8
872,399 - -0.5
872,399 - -1.3
872,543 + ABIE53_000804 0.15 -0.8
872,543 + ABIE53_000804 0.15 +0.6
872,543 + ABIE53_000804 0.15 -0.5
872,543 + ABIE53_000804 0.15 -1.5
872,543 + ABIE53_000804 0.15 +0.9
872,543 + ABIE53_000804 0.15 +0.4
872,544 - ABIE53_000804 0.15 -0.5
872,544 - ABIE53_000804 0.15 +0.1
872,551 - ABIE53_000804 0.16 +0.9
872,645 + ABIE53_000804 0.26 +1.3
872,654 + ABIE53_000804 0.27 -1.3
872,654 + ABIE53_000804 0.27 -0.4
872,654 + ABIE53_000804 0.27 -1.8
872,654 + ABIE53_000804 0.27 -1.2
872,655 - ABIE53_000804 0.27 -0.5
872,655 - ABIE53_000804 0.27 -0.1
872,679 - ABIE53_000804 0.30 +0.1
872,679 - ABIE53_000804 0.30 +0.0
873,077 + ABIE53_000804 0.76 +2.5
873,078 - ABIE53_000804 0.76 +0.5
873,171 + ABIE53_000804 0.87 +0.5
873,171 + ABIE53_000804 0.87 +1.2
873,171 + ABIE53_000804 0.87 -1.1
873,271 - -0.5
873,271 - +0.5
873,271 - +1.3
873,271 - -0.6
873,306 + -0.2
873,306 + -1.9
873,306 + +0.4
873,307 - -0.4
873,307 - +0.4
873,497 - ABIE53_000805 0.22 -1.8
873,776 - ABIE53_000805 0.59 -1.5
873,799 + ABIE53_000805 0.62 -2.1
873,799 + ABIE53_000805 0.62 -1.8
873,799 + ABIE53_000805 0.62 -1.1
873,800 - ABIE53_000805 0.62 -3.1
873,914 - ABIE53_000805 0.77 -2.8
874,044 + -1.1
874,055 - -1.3
874,055 - -1.6
874,055 - -1.6

Or see this region's nucleotide sequence