Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3189 and DvMF_3190 overlap by 4 nucleotides DvMF_3190 and DvMF_3191 overlap by 32 nucleotides DvMF_3191 and DvMF_3192 are separated by 3 nucleotides DvMF_3192 and DvMF_3193 are separated by 16 nucleotides
DvMF_3189: DvMF_3189 - NADH dehydrogenase (quinone) (RefSeq), at 4,019,464 to 4,020,597
_3189
DvMF_3190: DvMF_3190 - NADH dehydrogenase (ubiquinone) 30 kDa subunit (RefSeq), at 4,020,594 to 4,021,241
_3190
DvMF_3191: DvMF_3191 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 4,021,210 to 4,021,899
_3191
DvMF_3192: DvMF_3192 - NADH ubiquinone oxidoreductase 20 kDa subunit (RefSeq), at 4,021,903 to 4,022,343
_3192
DvMF_3193: DvMF_3193 - respiratory-chain NADH dehydrogenase subunit 1 (RefSeq), at 4,022,360 to 4,023,358
_3193
Position (kb) 4021
4022 Strain fitness (log2 ratio) -1
0
1
2 at 4020.230 kb on - strand, within DvMF_3189 at 4020.585 kb on + strand at 4020.968 kb on + strand, within DvMF_3190 at 4020.970 kb on - strand, within DvMF_3190 at 4021.207 kb on + strand at 4021.568 kb on - strand, within DvMF_3191 at 4022.171 kb on + strand, within DvMF_3192 at 4022.587 kb on - strand, within DvMF_3193 at 4022.624 kb on + strand, within DvMF_3193
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 4,020,230 - DvMF_3189 0.68 +0.7 4,020,585 + -0.1 4,020,968 + DvMF_3190 0.58 -0.5 4,020,970 - DvMF_3190 0.58 +0.8 4,021,207 + +1.1 4,021,568 - DvMF_3191 0.52 +2.5 4,022,171 + DvMF_3192 0.61 -0.5 4,022,587 - DvMF_3193 0.23 -1.1 4,022,624 + DvMF_3193 0.26 -0.5
Or see this region's nucleotide sequence