Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2794

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2793 and DvMF_2794 are separated by 355 nucleotidesDvMF_2794 and DvMF_2795 are separated by 105 nucleotides DvMF_2793: DvMF_2793 - Pirin domain protein (RefSeq), at 3,536,260 to 3,537,198 _2793 DvMF_2794: DvMF_2794 - hypothetical protein (RefSeq), at 3,537,554 to 3,537,877 _2794 DvMF_2795: DvMF_2795 - peptidase M29 aminopeptidase II (RefSeq), at 3,537,983 to 3,539,182 _2795 Position (kb) 3537 3538Strain fitness (log2 ratio) -1 0 1at 3536.700 kb on - strand, within DvMF_2793at 3536.876 kb on + strand, within DvMF_2793at 3536.923 kb on - strand, within DvMF_2793at 3536.991 kb on + strand, within DvMF_2793at 3537.084 kb on + strand, within DvMF_2793at 3537.310 kb on - strandat 3537.329 kb on + strandat 3537.444 kb on + strandat 3537.452 kb on - strandat 3537.489 kb on - strandat 3537.517 kb on + strandat 3537.530 kb on - strandat 3537.535 kb on - strandat 3537.535 kb on - strandat 3537.559 kb on + strandat 3537.625 kb on + strand, within DvMF_2794at 3538.238 kb on - strand, within DvMF_2795at 3538.441 kb on + strand, within DvMF_2795at 3538.474 kb on + strand, within DvMF_2795at 3538.551 kb on - strand, within DvMF_2795at 3538.551 kb on - strand, within DvMF_2795at 3538.783 kb on + strand, within DvMF_2795at 3538.794 kb on - strand, within DvMF_2795at 3538.828 kb on - strand, within DvMF_2795

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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3,536,700 - DvMF_2793 0.47 +0.0
3,536,876 + DvMF_2793 0.66 +0.6
3,536,923 - DvMF_2793 0.71 +1.1
3,536,991 + DvMF_2793 0.78 -1.1
3,537,084 + DvMF_2793 0.88 -0.2
3,537,310 - -0.6
3,537,329 + -0.0
3,537,444 + -0.9
3,537,452 - -0.1
3,537,489 - -0.5
3,537,517 + -0.2
3,537,530 - +0.1
3,537,535 - +1.0
3,537,535 - +0.9
3,537,559 + -0.7
3,537,625 + DvMF_2794 0.22 +0.7
3,538,238 - DvMF_2795 0.21 +0.0
3,538,441 + DvMF_2795 0.38 -0.3
3,538,474 + DvMF_2795 0.41 -1.3
3,538,551 - DvMF_2795 0.47 -0.5
3,538,551 - DvMF_2795 0.47 -1.1
3,538,783 + DvMF_2795 0.67 +0.1
3,538,794 - DvMF_2795 0.68 -0.4
3,538,828 - DvMF_2795 0.70 -0.8

Or see this region's nucleotide sequence