Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2752

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2751 and DvMF_2752 overlap by 4 nucleotidesDvMF_2752 and DvMF_2753 overlap by 4 nucleotides DvMF_2751: DvMF_2751 - inner-membrane translocator (RefSeq), at 3,476,605 to 3,477,510 _2751 DvMF_2752: DvMF_2752 - inner-membrane translocator (RefSeq), at 3,477,507 to 3,478,499 _2752 DvMF_2753: DvMF_2753 - ABC transporter related (RefSeq), at 3,478,496 to 3,479,263 _2753 Position (kb) 3477 3478 3479Strain fitness (log2 ratio) -1 0 1 2 3at 3476.513 kb on + strandat 3476.529 kb on + strandat 3476.554 kb on - strandat 3476.591 kb on + strandat 3476.673 kb on + strandat 3476.673 kb on + strandat 3476.681 kb on - strandat 3476.681 kb on - strandat 3476.685 kb on + strandat 3476.693 kb on - strandat 3476.823 kb on + strand, within DvMF_2751at 3476.987 kb on - strand, within DvMF_2751at 3477.011 kb on + strand, within DvMF_2751at 3477.101 kb on + strand, within DvMF_2751at 3477.128 kb on + strand, within DvMF_2751at 3477.226 kb on - strand, within DvMF_2751at 3477.250 kb on - strand, within DvMF_2751at 3477.250 kb on - strand, within DvMF_2751at 3477.350 kb on + strand, within DvMF_2751at 3477.719 kb on + strand, within DvMF_2752at 3477.997 kb on - strand, within DvMF_2752at 3478.002 kb on - strand, within DvMF_2752at 3478.009 kb on + strand, within DvMF_2752at 3478.132 kb on - strand, within DvMF_2752at 3478.236 kb on - strand, within DvMF_2752at 3478.272 kb on - strand, within DvMF_2752at 3478.351 kb on + strand, within DvMF_2752at 3478.351 kb on + strand, within DvMF_2752at 3478.856 kb on - strand, within DvMF_2753at 3478.921 kb on - strand, within DvMF_2753at 3479.065 kb on + strand, within DvMF_2753at 3479.227 kb on + strandat 3479.313 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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3,476,513 + -0.4
3,476,529 + -0.8
3,476,554 - +0.0
3,476,591 + -0.3
3,476,673 + -0.4
3,476,673 + -0.7
3,476,681 - -0.5
3,476,681 - -0.5
3,476,685 + -0.2
3,476,693 - -1.5
3,476,823 + DvMF_2751 0.24 -0.6
3,476,987 - DvMF_2751 0.42 -0.6
3,477,011 + DvMF_2751 0.45 -1.2
3,477,101 + DvMF_2751 0.55 +0.2
3,477,128 + DvMF_2751 0.58 +0.4
3,477,226 - DvMF_2751 0.69 -0.0
3,477,250 - DvMF_2751 0.71 -0.2
3,477,250 - DvMF_2751 0.71 +0.6
3,477,350 + DvMF_2751 0.82 +0.4
3,477,719 + DvMF_2752 0.21 -0.7
3,477,997 - DvMF_2752 0.49 +0.1
3,478,002 - DvMF_2752 0.50 +0.1
3,478,009 + DvMF_2752 0.51 -1.1
3,478,132 - DvMF_2752 0.63 -0.7
3,478,236 - DvMF_2752 0.73 -0.4
3,478,272 - DvMF_2752 0.77 -0.0
3,478,351 + DvMF_2752 0.85 -0.7
3,478,351 + DvMF_2752 0.85 -0.5
3,478,856 - DvMF_2753 0.47 -0.2
3,478,921 - DvMF_2753 0.55 +2.8
3,479,065 + DvMF_2753 0.74 -1.7
3,479,227 + -0.5
3,479,313 - -0.3

Or see this region's nucleotide sequence