Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2111

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2110 and DvMF_2111 are separated by 392 nucleotidesDvMF_2111 and DvMF_2112 are separated by 433 nucleotides DvMF_2110: DvMF_2110 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 2,630,115 to 2,631,065 _2110 DvMF_2111: DvMF_2111 - hypothetical protein (RefSeq), at 2,631,458 to 2,631,952 _2111 DvMF_2112: DvMF_2112 - ADP-ribosylation/Crystallin J1 (RefSeq), at 2,632,386 to 2,633,303 _2112 Position (kb) 2631 2632Strain fitness (log2 ratio) -2 -1 0 1at 2630.714 kb on - strand, within DvMF_2110at 2630.886 kb on - strand, within DvMF_2110at 2631.034 kb on - strandat 2631.460 kb on - strandat 2631.610 kb on - strand, within DvMF_2111at 2631.729 kb on + strand, within DvMF_2111at 2631.812 kb on - strand, within DvMF_2111at 2631.888 kb on - strand, within DvMF_2111at 2631.888 kb on - strand, within DvMF_2111at 2631.900 kb on + strand, within DvMF_2111at 2631.956 kb on - strandat 2632.380 kb on - strandat 2632.691 kb on - strand, within DvMF_2112at 2632.706 kb on + strand, within DvMF_2112at 2632.751 kb on + strand, within DvMF_2112at 2632.754 kb on - strand, within DvMF_2112at 2632.852 kb on + strand, within DvMF_2112

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,630,714 - DvMF_2110 0.63 -2.3
2,630,886 - DvMF_2110 0.81 -0.4
2,631,034 - -0.6
2,631,460 - -1.8
2,631,610 - DvMF_2111 0.31 -0.8
2,631,729 + DvMF_2111 0.55 +0.5
2,631,812 - DvMF_2111 0.72 +0.5
2,631,888 - DvMF_2111 0.87 -1.5
2,631,888 - DvMF_2111 0.87 +0.4
2,631,900 + DvMF_2111 0.89 -0.0
2,631,956 - -0.2
2,632,380 - +0.7
2,632,691 - DvMF_2112 0.33 +0.3
2,632,706 + DvMF_2112 0.35 -0.5
2,632,751 + DvMF_2112 0.40 -0.6
2,632,754 - DvMF_2112 0.40 -0.9
2,632,852 + DvMF_2112 0.51 -0.8

Or see this region's nucleotide sequence