Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1882

Experiment: L-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1881 and DvMF_1882 are separated by 267 nucleotidesDvMF_1882 and DvMF_1883 overlap by 8 nucleotides DvMF_1881: DvMF_1881 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,315,847 to 2,317,625 _1881 DvMF_1882: DvMF_1882 - acetolactate synthase 1 regulatory subunit (RefSeq), at 2,317,893 to 2,318,258 _1882 DvMF_1883: DvMF_1883 - acetolactate synthase catalytic subunit (RefSeq), at 2,318,251 to 2,320,098 _1883 Position (kb) 2317 2318 2319Strain fitness (log2 ratio) -2 -1 0 1 2at 2317.326 kb on + strand, within DvMF_1881at 2317.336 kb on - strand, within DvMF_1881at 2317.584 kb on - strandat 2317.944 kb on + strand, within DvMF_1882at 2318.170 kb on + strand, within DvMF_1882at 2318.436 kb on - strand, within DvMF_1883at 2318.519 kb on - strand, within DvMF_1883at 2318.558 kb on + strand, within DvMF_1883at 2318.561 kb on - strand, within DvMF_1883at 2318.566 kb on - strand, within DvMF_1883at 2318.579 kb on + strand, within DvMF_1883at 2318.724 kb on - strand, within DvMF_1883at 2318.783 kb on + strand, within DvMF_1883at 2318.792 kb on - strand, within DvMF_1883at 2318.828 kb on + strand, within DvMF_1883at 2318.828 kb on + strand, within DvMF_1883at 2318.836 kb on - strand, within DvMF_1883at 2318.836 kb on - strand, within DvMF_1883at 2318.836 kb on - strand, within DvMF_1883at 2318.836 kb on - strand, within DvMF_1883at 2318.836 kb on - strand, within DvMF_1883at 2318.921 kb on - strand, within DvMF_1883at 2318.956 kb on + strand, within DvMF_1883at 2319.055 kb on + strand, within DvMF_1883at 2319.080 kb on + strand, within DvMF_1883at 2319.157 kb on - strand, within DvMF_1883at 2319.172 kb on - strand, within DvMF_1883

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
remove
2,317,326 + DvMF_1881 0.83 +2.1
2,317,336 - DvMF_1881 0.84 -0.0
2,317,584 - -0.8
2,317,944 + DvMF_1882 0.14 -0.5
2,318,170 + DvMF_1882 0.76 -1.8
2,318,436 - DvMF_1883 0.10 -0.5
2,318,519 - DvMF_1883 0.15 -0.5
2,318,558 + DvMF_1883 0.17 -0.2
2,318,561 - DvMF_1883 0.17 +0.1
2,318,566 - DvMF_1883 0.17 -0.4
2,318,579 + DvMF_1883 0.18 -0.7
2,318,724 - DvMF_1883 0.26 +0.2
2,318,783 + DvMF_1883 0.29 +0.2
2,318,792 - DvMF_1883 0.29 -1.3
2,318,828 + DvMF_1883 0.31 -0.6
2,318,828 + DvMF_1883 0.31 +0.6
2,318,836 - DvMF_1883 0.32 -0.5
2,318,836 - DvMF_1883 0.32 -0.3
2,318,836 - DvMF_1883 0.32 -0.6
2,318,836 - DvMF_1883 0.32 -1.1
2,318,836 - DvMF_1883 0.32 -0.5
2,318,921 - DvMF_1883 0.36 -0.4
2,318,956 + DvMF_1883 0.38 -0.4
2,319,055 + DvMF_1883 0.44 -1.0
2,319,080 + DvMF_1883 0.45 -0.4
2,319,157 - DvMF_1883 0.49 -1.1
2,319,172 - DvMF_1883 0.50 -1.6

Or see this region's nucleotide sequence