Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1793

Experiment: L-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1792 and DvMF_1793 are separated by 53 nucleotidesDvMF_1793 and DvMF_1794 are separated by 254 nucleotides DvMF_1792: DvMF_1792 - 3-isopropylmalate dehydratase large subunit (RefSeq), at 2,192,427 to 2,193,683 _1792 DvMF_1793: DvMF_1793 - 3-isopropylmalate dehydratase, small subunit (RefSeq), at 2,193,737 to 2,194,228 _1793 DvMF_1794: DvMF_1794 - 3-isopropylmalate dehydrogenase (RefSeq), at 2,194,483 to 2,195,559 _1794 Position (kb) 2193 2194 2195Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2192.752 kb on + strand, within DvMF_1792at 2192.770 kb on - strand, within DvMF_1792at 2192.931 kb on + strand, within DvMF_1792at 2192.941 kb on - strand, within DvMF_1792at 2192.947 kb on + strand, within DvMF_1792at 2193.206 kb on + strand, within DvMF_1792at 2193.383 kb on + strand, within DvMF_1792at 2193.431 kb on + strand, within DvMF_1792at 2193.536 kb on + strand, within DvMF_1792at 2193.833 kb on - strand, within DvMF_1793at 2193.855 kb on + strand, within DvMF_1793at 2194.210 kb on - strandat 2194.247 kb on - strandat 2194.247 kb on - strandat 2194.399 kb on + strandat 2194.616 kb on - strand, within DvMF_1794at 2195.112 kb on + strand, within DvMF_1794

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
remove
2,192,752 + DvMF_1792 0.26 -2.6
2,192,770 - DvMF_1792 0.27 -3.7
2,192,931 + DvMF_1792 0.40 -3.7
2,192,941 - DvMF_1792 0.41 -3.5
2,192,947 + DvMF_1792 0.41 -4.6
2,193,206 + DvMF_1792 0.62 -3.0
2,193,383 + DvMF_1792 0.76 -4.3
2,193,431 + DvMF_1792 0.80 -3.7
2,193,536 + DvMF_1792 0.88 -2.1
2,193,833 - DvMF_1793 0.20 -3.2
2,193,855 + DvMF_1793 0.24 -2.1
2,194,210 - -1.3
2,194,247 - -1.0
2,194,247 - -1.3
2,194,399 + -0.9
2,194,616 - DvMF_1794 0.12 -3.1
2,195,112 + DvMF_1794 0.58 -4.5

Or see this region's nucleotide sequence